Gene : Thecc1EG020274 T. cacao v1.1
Defline:  (1 of 1) PTHR11946//PTHR11946:SF78 - ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES // SUBFAMILY NOT NAMED Genomic Order:  2039
Name:  ? Thecc1EG020274 Secondary Identifier:  ? PAC:27455634
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao TRNA-CHARGING-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG020274 0.5kb upstream 0.5kb upstream 8814 true scaffold_4: 27616064-27624877 Theobroma cacao
Thecc1EG020274 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 27616064-27616563 Theobroma cacao
Thecc1EG020274 0.5kb downstream 0.5kb downstream 8814 true scaffold_4: 27616564-27625377 Theobroma cacao
Thecc1EG020274 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 27624878-27625377 Theobroma cacao
Thecc1EG020274 1.0kb upstream 1.0kb upstream 9314 true scaffold_4: 27615564-27624877 Theobroma cacao
Thecc1EG020274 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 27615564-27616563 Theobroma cacao
Thecc1EG020274 1.0kb downstream 1.0kb downstream 9314 true scaffold_4: 27616564-27625877 Theobroma cacao
Thecc1EG020274 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 27624878-27625877 Theobroma cacao
Thecc1EG020274 2.0kb upstream 2.0kb upstream 10314 true scaffold_4: 27614564-27624877 Theobroma cacao
Thecc1EG020274 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 27614564-27616563 Theobroma cacao
Thecc1EG020274 2.0kb downstream 2.0kb downstream 10314 true scaffold_4: 27616564-27626877 Theobroma cacao
Thecc1EG020274 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 27624878-27626877 Theobroma cacao
Thecc1EG020274 5.0kb upstream 5.0kb upstream 13314 true scaffold_4: 27611564-27624877 Theobroma cacao
Thecc1EG020274 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 27611564-27616563 Theobroma cacao
Thecc1EG020274 5.0kb downstream 5.0kb downstream 13314 true scaffold_4: 27616564-27629877 Theobroma cacao
Thecc1EG020274 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 27624878-27629877 Theobroma cacao
Thecc1EG020274 10.0kb upstream 10.0kb upstream 18314 true scaffold_4: 27606564-27624877 Theobroma cacao
Thecc1EG020274 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 27606564-27616563 Theobroma cacao
Thecc1EG020274 10.0kb downstream 10.0kb downstream 18314 true scaffold_4: 27616564-27634877 Theobroma cacao
Thecc1EG020274 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 27624878-27634877 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123828718 5264 Brassicales-Malvales View MSA
124338406 5266 SBM View MSA
124247313 5268 Malvidae View MSA
124066402 5270 Rosid View MSA
123739463 5271 Pentapetalae View MSA
122793532 5272 Eudicot View MSA
122041539 5273 Angiosperm View MSA
121348816 5274 Embryophyte View MSA
123428788 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain