Gene : Thecc1EG020171 T. cacao v1.1
Defline:  (1 of 1) PTHR23270//PTHR23270:SF9 - PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5 // SUBFAMILY NOT NAMED Genomic Order:  1951
Name:  ? Thecc1EG020171 Secondary Identifier:  ? PAC:27456270
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG020171 0.5kb upstream 0.5kb upstream 5142 true scaffold_4: 27070564-27075705 Theobroma cacao
Thecc1EG020171 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 27075206-27075705 Theobroma cacao
Thecc1EG020171 0.5kb downstream 0.5kb downstream 5142 true scaffold_4: 27070064-27075205 Theobroma cacao
Thecc1EG020171 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 27070064-27070563 Theobroma cacao
Thecc1EG020171 1.0kb upstream 1.0kb upstream 5642 true scaffold_4: 27070564-27076205 Theobroma cacao
Thecc1EG020171 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 27075206-27076205 Theobroma cacao
Thecc1EG020171 1.0kb downstream 1.0kb downstream 5642 true scaffold_4: 27069564-27075205 Theobroma cacao
Thecc1EG020171 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 27069564-27070563 Theobroma cacao
Thecc1EG020171 2.0kb upstream 2.0kb upstream 6642 true scaffold_4: 27070564-27077205 Theobroma cacao
Thecc1EG020171 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 27075206-27077205 Theobroma cacao
Thecc1EG020171 2.0kb downstream 2.0kb downstream 6642 true scaffold_4: 27068564-27075205 Theobroma cacao
Thecc1EG020171 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 27068564-27070563 Theobroma cacao
Thecc1EG020171 5.0kb upstream 5.0kb upstream 9642 true scaffold_4: 27070564-27080205 Theobroma cacao
Thecc1EG020171 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 27075206-27080205 Theobroma cacao
Thecc1EG020171 5.0kb downstream 5.0kb downstream 9642 true scaffold_4: 27065564-27075205 Theobroma cacao
Thecc1EG020171 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 27065564-27070563 Theobroma cacao
Thecc1EG020171 10.0kb upstream 10.0kb upstream 14642 true scaffold_4: 27070564-27085205 Theobroma cacao
Thecc1EG020171 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 27075206-27085205 Theobroma cacao
Thecc1EG020171 10.0kb downstream 10.0kb downstream 14642 true scaffold_4: 27060564-27075205 Theobroma cacao
Thecc1EG020171 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 27060564-27070563 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123834907 5264 Brassicales-Malvales View MSA
124339157 5266 SBM View MSA
124237979 5268 Malvidae View MSA
124064090 5270 Rosid View MSA
123737111 5271 Pentapetalae View MSA
122791346 5272 Eudicot View MSA
122043466 5273 Angiosperm View MSA
121344790 5274 Embryophyte View MSA
123423896 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain