Gene : Thecc1EG020442 T. cacao v1.1
Defline:  (1 of 2) PTHR31232//PTHR31232:SF2 - FAMILY NOT NAMED // GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MDJ14-RELATED Genomic Order:  2189
Name:  ? Thecc1EG020442 Secondary Identifier:  ? PAC:27455426
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG020442 0.5kb upstream 0.5kb upstream 3485 true scaffold_4: 28593304-28596788 Theobroma cacao
Thecc1EG020442 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 28596289-28596788 Theobroma cacao
Thecc1EG020442 0.5kb downstream 0.5kb downstream 3485 true scaffold_4: 28592804-28596288 Theobroma cacao
Thecc1EG020442 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 28592804-28593303 Theobroma cacao
Thecc1EG020442 1.0kb upstream 1.0kb upstream 3985 true scaffold_4: 28593304-28597288 Theobroma cacao
Thecc1EG020442 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 28596289-28597288 Theobroma cacao
Thecc1EG020442 1.0kb downstream 1.0kb downstream 3985 true scaffold_4: 28592304-28596288 Theobroma cacao
Thecc1EG020442 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 28592304-28593303 Theobroma cacao
Thecc1EG020442 2.0kb upstream 2.0kb upstream 4985 true scaffold_4: 28593304-28598288 Theobroma cacao
Thecc1EG020442 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 28596289-28598288 Theobroma cacao
Thecc1EG020442 2.0kb downstream 2.0kb downstream 4985 true scaffold_4: 28591304-28596288 Theobroma cacao
Thecc1EG020442 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 28591304-28593303 Theobroma cacao
Thecc1EG020442 5.0kb upstream 5.0kb upstream 7985 true scaffold_4: 28593304-28601288 Theobroma cacao
Thecc1EG020442 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 28596289-28601288 Theobroma cacao
Thecc1EG020442 5.0kb downstream 5.0kb downstream 7985 true scaffold_4: 28588304-28596288 Theobroma cacao
Thecc1EG020442 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 28588304-28593303 Theobroma cacao
Thecc1EG020442 10.0kb upstream 10.0kb upstream 12985 true scaffold_4: 28593304-28606288 Theobroma cacao
Thecc1EG020442 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 28596289-28606288 Theobroma cacao
Thecc1EG020442 10.0kb downstream 10.0kb downstream 12985 true scaffold_4: 28583304-28596288 Theobroma cacao
Thecc1EG020442 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 28583304-28593303 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123819635 5264 Brassicales-Malvales Singleton cluster - no MSA
124315879 5266 SBM Singleton cluster - no MSA
124253811 5268 Malvidae View MSA
124072251 5270 Rosid View MSA
123752988 5271 Pentapetalae View MSA
122797955 5272 Eudicot View MSA
122045805 5273 Angiosperm View MSA
121350645 5274 Embryophyte View MSA
123381836 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain