Gene : Thecc1EG020575 T. cacao v1.1
Defline:  (1 of 11) PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  2302
Name:  ? Thecc1EG020575 Secondary Identifier:  ? PAC:27455962
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG020575 0.5kb upstream 0.5kb upstream 3946 true scaffold_4: 29182049-29185994 Theobroma cacao
Thecc1EG020575 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 29185495-29185994 Theobroma cacao
Thecc1EG020575 0.5kb downstream 0.5kb downstream 3946 true scaffold_4: 29181549-29185494 Theobroma cacao
Thecc1EG020575 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 29181549-29182048 Theobroma cacao
Thecc1EG020575 1.0kb upstream 1.0kb upstream 4446 true scaffold_4: 29182049-29186494 Theobroma cacao
Thecc1EG020575 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 29185495-29186494 Theobroma cacao
Thecc1EG020575 1.0kb downstream 1.0kb downstream 4446 true scaffold_4: 29181049-29185494 Theobroma cacao
Thecc1EG020575 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 29181049-29182048 Theobroma cacao
Thecc1EG020575 2.0kb upstream 2.0kb upstream 5446 true scaffold_4: 29182049-29187494 Theobroma cacao
Thecc1EG020575 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 29185495-29187494 Theobroma cacao
Thecc1EG020575 2.0kb downstream 2.0kb downstream 5446 true scaffold_4: 29180049-29185494 Theobroma cacao
Thecc1EG020575 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 29180049-29182048 Theobroma cacao
Thecc1EG020575 5.0kb upstream 5.0kb upstream 8446 true scaffold_4: 29182049-29190494 Theobroma cacao
Thecc1EG020575 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 29185495-29190494 Theobroma cacao
Thecc1EG020575 5.0kb downstream 5.0kb downstream 8446 true scaffold_4: 29177049-29185494 Theobroma cacao
Thecc1EG020575 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 29177049-29182048 Theobroma cacao
Thecc1EG020575 10.0kb upstream 10.0kb upstream 13446 true scaffold_4: 29182049-29195494 Theobroma cacao
Thecc1EG020575 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 29185495-29195494 Theobroma cacao
Thecc1EG020575 10.0kb downstream 10.0kb downstream 13446 true scaffold_4: 29172049-29185494 Theobroma cacao
Thecc1EG020575 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 29172049-29182048 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026493 5273 Angiosperm View MSA
123827951 5264 Brassicales-Malvales View MSA
124345101 5266 SBM View MSA
124238628 5268 Malvidae View MSA
124068457 5270 Rosid View MSA
123738065 5271 Pentapetalae View MSA
122785849 5272 Eudicot View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain