Gene : Thecc1EG020479 T. cacao v1.1
Defline:  (1 of 1) PTHR20852//PTHR20852:SF53 - GLUTAMINE SYNTHETASE // GLUTAMINE SYNTHETASE, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  2224
Name:  ? Thecc1EG020479 Secondary Identifier:  ? PAC:27455382
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao GLNSYN-PWY Theobroma cacao pathologic  
Tcacao PWY-3282 Theobroma cacao pathologic  
Tcacao PWY-381 Theobroma cacao pathologic  
Tcacao PWY-6549 Theobroma cacao pathologic  
Tcacao PWY-6963 Theobroma cacao pathologic  
Tcacao PWY-6964 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG020479 0.5kb upstream 0.5kb upstream 5871 true scaffold_4: 28750570-28756440 Theobroma cacao
Thecc1EG020479 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 28755941-28756440 Theobroma cacao
Thecc1EG020479 0.5kb downstream 0.5kb downstream 5871 true scaffold_4: 28750070-28755940 Theobroma cacao
Thecc1EG020479 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 28750070-28750569 Theobroma cacao
Thecc1EG020479 1.0kb upstream 1.0kb upstream 6371 true scaffold_4: 28750570-28756940 Theobroma cacao
Thecc1EG020479 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 28755941-28756940 Theobroma cacao
Thecc1EG020479 1.0kb downstream 1.0kb downstream 6371 true scaffold_4: 28749570-28755940 Theobroma cacao
Thecc1EG020479 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 28749570-28750569 Theobroma cacao
Thecc1EG020479 2.0kb upstream 2.0kb upstream 7371 true scaffold_4: 28750570-28757940 Theobroma cacao
Thecc1EG020479 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 28755941-28757940 Theobroma cacao
Thecc1EG020479 2.0kb downstream 2.0kb downstream 7371 true scaffold_4: 28748570-28755940 Theobroma cacao
Thecc1EG020479 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 28748570-28750569 Theobroma cacao
Thecc1EG020479 5.0kb upstream 5.0kb upstream 10371 true scaffold_4: 28750570-28760940 Theobroma cacao
Thecc1EG020479 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 28755941-28760940 Theobroma cacao
Thecc1EG020479 5.0kb downstream 5.0kb downstream 10371 true scaffold_4: 28745570-28755940 Theobroma cacao
Thecc1EG020479 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 28745570-28750569 Theobroma cacao
Thecc1EG020479 10.0kb upstream 10.0kb upstream 15371 true scaffold_4: 28750570-28765940 Theobroma cacao
Thecc1EG020479 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 28755941-28765940 Theobroma cacao
Thecc1EG020479 10.0kb downstream 10.0kb downstream 15371 true scaffold_4: 28740570-28755940 Theobroma cacao
Thecc1EG020479 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 28740570-28750569 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123834963 5264 Brassicales-Malvales View MSA
124336894 5266 SBM View MSA
124240193 5268 Malvidae View MSA
124069672 5270 Rosid View MSA
123741738 5271 Pentapetalae View MSA
122788688 5272 Eudicot View MSA
122046528 5273 Angiosperm View MSA
121310618 5274 Embryophyte View MSA
123428761 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain