Gene : Thecc1EG020890 T. cacao v1.1
Defline:  (1 of 2) K00025 - malate dehydrogenase (MDH1) Genomic Order:  2576
Name:  ? Thecc1EG020890 Secondary Identifier:  ? PAC:27452430
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao GLUCONEO-PWY Theobroma cacao pathologic  
Tcacao GLYOXYLATE-BYPASS Theobroma cacao pathologic  
Tcacao PWY-5464 Theobroma cacao pathologic  
Tcacao PWY-561 Theobroma cacao pathologic  
Tcacao PWY-5690 Theobroma cacao pathologic  
Tcacao PWY66-399 Theobroma cacao pathologic  
Tcacao PWY-7115 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG020890 0.5kb upstream 0.5kb upstream 3819 true scaffold_4: 30750603-30754421 Theobroma cacao
Thecc1EG020890 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 30753922-30754421 Theobroma cacao
Thecc1EG020890 0.5kb downstream 0.5kb downstream 3819 true scaffold_4: 30750103-30753921 Theobroma cacao
Thecc1EG020890 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 30750103-30750602 Theobroma cacao
Thecc1EG020890 1.0kb upstream 1.0kb upstream 4319 true scaffold_4: 30750603-30754921 Theobroma cacao
Thecc1EG020890 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 30753922-30754921 Theobroma cacao
Thecc1EG020890 1.0kb downstream 1.0kb downstream 4319 true scaffold_4: 30749603-30753921 Theobroma cacao
Thecc1EG020890 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 30749603-30750602 Theobroma cacao
Thecc1EG020890 2.0kb upstream 2.0kb upstream 5319 true scaffold_4: 30750603-30755921 Theobroma cacao
Thecc1EG020890 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 30753922-30755921 Theobroma cacao
Thecc1EG020890 2.0kb downstream 2.0kb downstream 5319 true scaffold_4: 30748603-30753921 Theobroma cacao
Thecc1EG020890 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 30748603-30750602 Theobroma cacao
Thecc1EG020890 5.0kb upstream 5.0kb upstream 8319 true scaffold_4: 30750603-30758921 Theobroma cacao
Thecc1EG020890 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 30753922-30758921 Theobroma cacao
Thecc1EG020890 5.0kb downstream 5.0kb downstream 8319 true scaffold_4: 30745603-30753921 Theobroma cacao
Thecc1EG020890 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 30745603-30750602 Theobroma cacao
Thecc1EG020890 10.0kb upstream 10.0kb upstream 13319 true scaffold_4: 30750603-30763921 Theobroma cacao
Thecc1EG020890 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 30753922-30763921 Theobroma cacao
Thecc1EG020890 10.0kb downstream 10.0kb downstream 13319 true scaffold_4: 30740603-30753921 Theobroma cacao
Thecc1EG020890 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 30740603-30750602 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123832560 5264 Brassicales-Malvales View MSA
124339900 5266 SBM View MSA
124244988 5268 Malvidae View MSA
124064013 5270 Rosid View MSA
123739138 5271 Pentapetalae View MSA
122789281 5272 Eudicot View MSA
122050336 5273 Angiosperm View MSA
121345674 5274 Embryophyte View MSA
123426378 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain