Gene : Thecc1EG020813 T. cacao v1.1
Defline:  (1 of 5) PTHR13301//PTHR13301:SF41 - X-BOX TRANSCRIPTION FACTOR-RELATED // SUBFAMILY NOT NAMED Genomic Order:  2513
Name:  ? Thecc1EG020813 Secondary Identifier:  ? PAC:27452258
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-1001 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG020813 0.5kb upstream 0.5kb upstream 6501 true scaffold_4: 30376689-30383189 Theobroma cacao
Thecc1EG020813 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 30376689-30377188 Theobroma cacao
Thecc1EG020813 0.5kb downstream 0.5kb downstream 6501 true scaffold_4: 30377189-30383689 Theobroma cacao
Thecc1EG020813 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 30383190-30383689 Theobroma cacao
Thecc1EG020813 1.0kb upstream 1.0kb upstream 7001 true scaffold_4: 30376189-30383189 Theobroma cacao
Thecc1EG020813 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 30376189-30377188 Theobroma cacao
Thecc1EG020813 1.0kb downstream 1.0kb downstream 7001 true scaffold_4: 30377189-30384189 Theobroma cacao
Thecc1EG020813 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 30383190-30384189 Theobroma cacao
Thecc1EG020813 2.0kb upstream 2.0kb upstream 8001 true scaffold_4: 30375189-30383189 Theobroma cacao
Thecc1EG020813 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 30375189-30377188 Theobroma cacao
Thecc1EG020813 2.0kb downstream 2.0kb downstream 8001 true scaffold_4: 30377189-30385189 Theobroma cacao
Thecc1EG020813 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 30383190-30385189 Theobroma cacao
Thecc1EG020813 5.0kb upstream 5.0kb upstream 11001 true scaffold_4: 30372189-30383189 Theobroma cacao
Thecc1EG020813 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 30372189-30377188 Theobroma cacao
Thecc1EG020813 5.0kb downstream 5.0kb downstream 11001 true scaffold_4: 30377189-30388189 Theobroma cacao
Thecc1EG020813 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 30383190-30388189 Theobroma cacao
Thecc1EG020813 10.0kb upstream 10.0kb upstream 16001 true scaffold_4: 30367189-30383189 Theobroma cacao
Thecc1EG020813 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 30367189-30377188 Theobroma cacao
Thecc1EG020813 10.0kb downstream 10.0kb downstream 16001 true scaffold_4: 30377189-30393189 Theobroma cacao
Thecc1EG020813 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 30383190-30393189 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123825095 5264 Brassicales-Malvales View MSA
124320453 5266 SBM View MSA
124253777 5268 Malvidae View MSA
124070260 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain