Gene : Thecc1EG021107 T. cacao v1.1
Defline:  (1 of 5) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase Genomic Order:  2767
Name:  ? Thecc1EG021107 Secondary Identifier:  ? PAC:27454210
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-7560 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG021107 0.5kb upstream 0.5kb upstream 8010 true scaffold_4: 31661939-31669948 Theobroma cacao
Thecc1EG021107 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 31661939-31662438 Theobroma cacao
Thecc1EG021107 0.5kb downstream 0.5kb downstream 8010 true scaffold_4: 31662439-31670448 Theobroma cacao
Thecc1EG021107 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 31669949-31670448 Theobroma cacao
Thecc1EG021107 1.0kb upstream 1.0kb upstream 8510 true scaffold_4: 31661439-31669948 Theobroma cacao
Thecc1EG021107 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 31661439-31662438 Theobroma cacao
Thecc1EG021107 1.0kb downstream 1.0kb downstream 8510 true scaffold_4: 31662439-31670948 Theobroma cacao
Thecc1EG021107 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 31669949-31670948 Theobroma cacao
Thecc1EG021107 2.0kb upstream 2.0kb upstream 9510 true scaffold_4: 31660439-31669948 Theobroma cacao
Thecc1EG021107 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 31660439-31662438 Theobroma cacao
Thecc1EG021107 2.0kb downstream 2.0kb downstream 9510 true scaffold_4: 31662439-31671948 Theobroma cacao
Thecc1EG021107 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 31669949-31671948 Theobroma cacao
Thecc1EG021107 5.0kb upstream 5.0kb upstream 12510 true scaffold_4: 31657439-31669948 Theobroma cacao
Thecc1EG021107 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 31657439-31662438 Theobroma cacao
Thecc1EG021107 5.0kb downstream 5.0kb downstream 12510 true scaffold_4: 31662439-31674948 Theobroma cacao
Thecc1EG021107 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 31669949-31674948 Theobroma cacao
Thecc1EG021107 10.0kb upstream 10.0kb upstream 17510 true scaffold_4: 31652439-31669948 Theobroma cacao
Thecc1EG021107 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 31652439-31662438 Theobroma cacao
Thecc1EG021107 10.0kb downstream 10.0kb downstream 17510 true scaffold_4: 31662439-31679948 Theobroma cacao
Thecc1EG021107 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 31669949-31679948 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123830613 5264 Brassicales-Malvales View MSA
124343663 5266 SBM View MSA
124239163 5268 Malvidae View MSA
124069132 5270 Rosid View MSA
123739716 5271 Pentapetalae View MSA
122785691 5272 Eudicot View MSA
122043887 5273 Angiosperm View MSA
121350299 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain