Gene : Thecc1EG021148 T. cacao v1.1
Defline:  (1 of 1) PTHR21319//PTHR21319:SF5 - RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 // SUBFAMILY NOT NAMED Genomic Order:  2804
Name:  ? Thecc1EG021148 Secondary Identifier:  ? PAC:27452449
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-7511 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG021148 0.5kb upstream 0.5kb upstream 5691 true scaffold_4: 31864897-31870587 Theobroma cacao
Thecc1EG021148 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 31870088-31870587 Theobroma cacao
Thecc1EG021148 0.5kb downstream 0.5kb downstream 5691 true scaffold_4: 31864397-31870087 Theobroma cacao
Thecc1EG021148 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 31864397-31864896 Theobroma cacao
Thecc1EG021148 1.0kb upstream 1.0kb upstream 6191 true scaffold_4: 31864897-31871087 Theobroma cacao
Thecc1EG021148 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 31870088-31871087 Theobroma cacao
Thecc1EG021148 1.0kb downstream 1.0kb downstream 6191 true scaffold_4: 31863897-31870087 Theobroma cacao
Thecc1EG021148 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 31863897-31864896 Theobroma cacao
Thecc1EG021148 2.0kb upstream 2.0kb upstream 7191 true scaffold_4: 31864897-31872087 Theobroma cacao
Thecc1EG021148 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 31870088-31872087 Theobroma cacao
Thecc1EG021148 2.0kb downstream 2.0kb downstream 7191 true scaffold_4: 31862897-31870087 Theobroma cacao
Thecc1EG021148 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 31862897-31864896 Theobroma cacao
Thecc1EG021148 5.0kb upstream 5.0kb upstream 10191 true scaffold_4: 31864897-31875087 Theobroma cacao
Thecc1EG021148 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 31870088-31875087 Theobroma cacao
Thecc1EG021148 5.0kb downstream 5.0kb downstream 10191 true scaffold_4: 31859897-31870087 Theobroma cacao
Thecc1EG021148 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 31859897-31864896 Theobroma cacao
Thecc1EG021148 10.0kb upstream 10.0kb upstream 15191 true scaffold_4: 31864897-31880087 Theobroma cacao
Thecc1EG021148 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 31870088-31880087 Theobroma cacao
Thecc1EG021148 10.0kb downstream 10.0kb downstream 15191 true scaffold_4: 31854897-31870087 Theobroma cacao
Thecc1EG021148 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 31854897-31864896 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123828340 5264 Brassicales-Malvales View MSA
124340435 5266 SBM View MSA
124251521 5268 Malvidae View MSA
124067904 5270 Rosid View MSA
123739632 5271 Pentapetalae View MSA
122785839 5272 Eudicot View MSA
122043981 5273 Angiosperm View MSA
123428990 5275 Viridiplantae View MSA
121310221 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain