Gene : Thecc1EG021446 T. cacao v1.1
Defline:  (1 of 2) PTHR16166//PTHR16166:SF93 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 // PROTEIN T08G11.1, ISOFORM A Genomic Order:  3084
Name:  ? Thecc1EG021446 Secondary Identifier:  ? PAC:27452015
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG021446 0.5kb upstream 0.5kb upstream 40691 true scaffold_4: 33097079-33137769 Theobroma cacao
Thecc1EG021446 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 33137270-33137769 Theobroma cacao
Thecc1EG021446 0.5kb downstream 0.5kb downstream 40691 true scaffold_4: 33096579-33137269 Theobroma cacao
Thecc1EG021446 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 33096579-33097078 Theobroma cacao
Thecc1EG021446 1.0kb upstream 1.0kb upstream 41191 true scaffold_4: 33097079-33138269 Theobroma cacao
Thecc1EG021446 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 33137270-33138269 Theobroma cacao
Thecc1EG021446 1.0kb downstream 1.0kb downstream 41191 true scaffold_4: 33096079-33137269 Theobroma cacao
Thecc1EG021446 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 33096079-33097078 Theobroma cacao
Thecc1EG021446 2.0kb upstream 2.0kb upstream 42191 true scaffold_4: 33097079-33139269 Theobroma cacao
Thecc1EG021446 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 33137270-33139269 Theobroma cacao
Thecc1EG021446 2.0kb downstream 2.0kb downstream 42191 true scaffold_4: 33095079-33137269 Theobroma cacao
Thecc1EG021446 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 33095079-33097078 Theobroma cacao
Thecc1EG021446 5.0kb upstream 5.0kb upstream 45191 true scaffold_4: 33097079-33142269 Theobroma cacao
Thecc1EG021446 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 33137270-33142269 Theobroma cacao
Thecc1EG021446 5.0kb downstream 5.0kb downstream 45191 true scaffold_4: 33092079-33137269 Theobroma cacao
Thecc1EG021446 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 33092079-33097078 Theobroma cacao
Thecc1EG021446 10.0kb upstream 10.0kb upstream 50191 true scaffold_4: 33097079-33147269 Theobroma cacao
Thecc1EG021446 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 33137270-33147269 Theobroma cacao
Thecc1EG021446 10.0kb downstream 10.0kb downstream 50191 true scaffold_4: 33087079-33137269 Theobroma cacao
Thecc1EG021446 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 33087079-33097078 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123839985 5264 Brassicales-Malvales View MSA
124346137 5266 SBM View MSA
124237267 5268 Malvidae View MSA
124063980 5270 Rosid View MSA
123740207 5271 Pentapetalae View MSA
122785969 5272 Eudicot View MSA
122048720 5273 Angiosperm View MSA
121349358 5274 Embryophyte View MSA
123424206 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain