Gene : Thecc1EG021591 T. cacao v1.1
Defline:  (1 of 1) PTHR11954:SF25 - LS1-LIKE PROTEIN Genomic Order:  67
Name:  ? Thecc1EG021591 Secondary Identifier:  ? PAC:27422681
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-6498 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG021591 0.5kb upstream 0.5kb upstream 2223 true scaffold_5: 359953-362175 Theobroma cacao
Thecc1EG021591 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 359953-360452 Theobroma cacao
Thecc1EG021591 0.5kb downstream 0.5kb downstream 2223 true scaffold_5: 360453-362675 Theobroma cacao
Thecc1EG021591 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 362176-362675 Theobroma cacao
Thecc1EG021591 1.0kb upstream 1.0kb upstream 2723 true scaffold_5: 359453-362175 Theobroma cacao
Thecc1EG021591 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 359453-360452 Theobroma cacao
Thecc1EG021591 1.0kb downstream 1.0kb downstream 2723 true scaffold_5: 360453-363175 Theobroma cacao
Thecc1EG021591 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 362176-363175 Theobroma cacao
Thecc1EG021591 2.0kb upstream 2.0kb upstream 3723 true scaffold_5: 358453-362175 Theobroma cacao
Thecc1EG021591 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 358453-360452 Theobroma cacao
Thecc1EG021591 2.0kb downstream 2.0kb downstream 3723 true scaffold_5: 360453-364175 Theobroma cacao
Thecc1EG021591 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 362176-364175 Theobroma cacao
Thecc1EG021591 5.0kb upstream 5.0kb upstream 6723 true scaffold_5: 355453-362175 Theobroma cacao
Thecc1EG021591 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 355453-360452 Theobroma cacao
Thecc1EG021591 5.0kb downstream 5.0kb downstream 6723 true scaffold_5: 360453-367175 Theobroma cacao
Thecc1EG021591 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 362176-367175 Theobroma cacao
Thecc1EG021591 10.0kb upstream 10.0kb upstream 11723 true scaffold_5: 350453-362175 Theobroma cacao
Thecc1EG021591 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 350453-360452 Theobroma cacao
Thecc1EG021591 10.0kb downstream 10.0kb downstream 11723 true scaffold_5: 360453-372175 Theobroma cacao
Thecc1EG021591 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 362176-372175 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026284 5273 Angiosperm View MSA
123836662 5264 Brassicales-Malvales View MSA
124346688 5266 SBM View MSA
124250805 5268 Malvidae View MSA
124069445 5270 Rosid View MSA
123741534 5271 Pentapetalae View MSA
122794012 5272 Eudicot View MSA
121349175 5274 Embryophyte View MSA
123424544 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain