Gene : Thecc1EG021548 T. cacao v1.1
Defline:  (1 of 2) PTHR31375//PTHR31375:SF2 - FAMILY NOT NAMED // POLYGALACTURONASE/PECTINASE Genomic Order:  27
Name:  ? Thecc1EG021548 Secondary Identifier:  ? PAC:27422001
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-1081 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG021548 0.5kb upstream 0.5kb upstream 4830 true scaffold_5: 159954-164783 Theobroma cacao
Thecc1EG021548 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 159954-160453 Theobroma cacao
Thecc1EG021548 0.5kb downstream 0.5kb downstream 4830 true scaffold_5: 160454-165283 Theobroma cacao
Thecc1EG021548 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 164784-165283 Theobroma cacao
Thecc1EG021548 1.0kb upstream 1.0kb upstream 5330 true scaffold_5: 159454-164783 Theobroma cacao
Thecc1EG021548 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 159454-160453 Theobroma cacao
Thecc1EG021548 1.0kb downstream 1.0kb downstream 5330 true scaffold_5: 160454-165783 Theobroma cacao
Thecc1EG021548 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 164784-165783 Theobroma cacao
Thecc1EG021548 2.0kb upstream 2.0kb upstream 6330 true scaffold_5: 158454-164783 Theobroma cacao
Thecc1EG021548 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 158454-160453 Theobroma cacao
Thecc1EG021548 2.0kb downstream 2.0kb downstream 6330 true scaffold_5: 160454-166783 Theobroma cacao
Thecc1EG021548 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 164784-166783 Theobroma cacao
Thecc1EG021548 5.0kb upstream 5.0kb upstream 9330 true scaffold_5: 155454-164783 Theobroma cacao
Thecc1EG021548 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 155454-160453 Theobroma cacao
Thecc1EG021548 5.0kb downstream 5.0kb downstream 9330 true scaffold_5: 160454-169783 Theobroma cacao
Thecc1EG021548 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 164784-169783 Theobroma cacao
Thecc1EG021548 10.0kb upstream 10.0kb upstream 14330 true scaffold_5: 150454-164783 Theobroma cacao
Thecc1EG021548 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 150454-160453 Theobroma cacao
Thecc1EG021548 10.0kb downstream 10.0kb downstream 14330 true scaffold_5: 160454-174783 Theobroma cacao
Thecc1EG021548 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 164784-174783 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123837359 5264 Brassicales-Malvales View MSA
124322295 5266 SBM View MSA
124252972 5268 Malvidae View MSA
124060937 5270 Rosid View MSA
123747300 5271 Pentapetalae View MSA
122794998 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain