Gene : Thecc1EG021905 T. cacao v1.1
Defline:  (1 of 3) PTHR11709:SF62 - LACCASE-2 Genomic Order:  349
Name:  ? Thecc1EG021905 Secondary Identifier:  ? PAC:27424190
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-5466 Theobroma cacao pathologic  
Tcacao PWY-6824 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG021905 0.5kb upstream 0.5kb upstream 7668 true scaffold_5: 1707023-1714690 Theobroma cacao
Thecc1EG021905 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 1707023-1707522 Theobroma cacao
Thecc1EG021905 0.5kb downstream 0.5kb downstream 7668 true scaffold_5: 1707523-1715190 Theobroma cacao
Thecc1EG021905 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 1714691-1715190 Theobroma cacao
Thecc1EG021905 1.0kb upstream 1.0kb upstream 8168 true scaffold_5: 1706523-1714690 Theobroma cacao
Thecc1EG021905 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 1706523-1707522 Theobroma cacao
Thecc1EG021905 1.0kb downstream 1.0kb downstream 8168 true scaffold_5: 1707523-1715690 Theobroma cacao
Thecc1EG021905 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 1714691-1715690 Theobroma cacao
Thecc1EG021905 2.0kb upstream 2.0kb upstream 9168 true scaffold_5: 1705523-1714690 Theobroma cacao
Thecc1EG021905 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 1705523-1707522 Theobroma cacao
Thecc1EG021905 2.0kb downstream 2.0kb downstream 9168 true scaffold_5: 1707523-1716690 Theobroma cacao
Thecc1EG021905 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 1714691-1716690 Theobroma cacao
Thecc1EG021905 5.0kb upstream 5.0kb upstream 12168 true scaffold_5: 1702523-1714690 Theobroma cacao
Thecc1EG021905 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 1702523-1707522 Theobroma cacao
Thecc1EG021905 5.0kb downstream 5.0kb downstream 12168 true scaffold_5: 1707523-1719690 Theobroma cacao
Thecc1EG021905 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 1714691-1719690 Theobroma cacao
Thecc1EG021905 10.0kb upstream 10.0kb upstream 17168 true scaffold_5: 1697523-1714690 Theobroma cacao
Thecc1EG021905 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 1697523-1707522 Theobroma cacao
Thecc1EG021905 10.0kb downstream 10.0kb downstream 17168 true scaffold_5: 1707523-1724690 Theobroma cacao
Thecc1EG021905 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 1714691-1724690 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123825543 5264 Brassicales-Malvales View MSA
124350966 5266 SBM View MSA
124245612 5268 Malvidae View MSA
124070693 5270 Rosid View MSA
123751220 5271 Pentapetalae View MSA
122795105 5272 Eudicot View MSA
122050716 5273 Angiosperm View MSA
121350155 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain