Gene : Thecc1EG021900 T. cacao v1.1
Defline:  (1 of 1) PTHR22763//PTHR22763:SF26 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  343
Name:  ? Thecc1EG021900 Secondary Identifier:  ? PAC:27425283
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-7511 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG021900 0.5kb upstream 0.5kb upstream 2163 true scaffold_5: 1677948-1680110 Theobroma cacao
Thecc1EG021900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 1677948-1678447 Theobroma cacao
Thecc1EG021900 0.5kb downstream 0.5kb downstream 2163 true scaffold_5: 1678448-1680610 Theobroma cacao
Thecc1EG021900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 1680111-1680610 Theobroma cacao
Thecc1EG021900 1.0kb upstream 1.0kb upstream 2663 true scaffold_5: 1677448-1680110 Theobroma cacao
Thecc1EG021900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 1677448-1678447 Theobroma cacao
Thecc1EG021900 1.0kb downstream 1.0kb downstream 2663 true scaffold_5: 1678448-1681110 Theobroma cacao
Thecc1EG021900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 1680111-1681110 Theobroma cacao
Thecc1EG021900 2.0kb upstream 2.0kb upstream 3663 true scaffold_5: 1676448-1680110 Theobroma cacao
Thecc1EG021900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 1676448-1678447 Theobroma cacao
Thecc1EG021900 2.0kb downstream 2.0kb downstream 3663 true scaffold_5: 1678448-1682110 Theobroma cacao
Thecc1EG021900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 1680111-1682110 Theobroma cacao
Thecc1EG021900 5.0kb upstream 5.0kb upstream 6663 true scaffold_5: 1673448-1680110 Theobroma cacao
Thecc1EG021900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 1673448-1678447 Theobroma cacao
Thecc1EG021900 5.0kb downstream 5.0kb downstream 6663 true scaffold_5: 1678448-1685110 Theobroma cacao
Thecc1EG021900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 1680111-1685110 Theobroma cacao
Thecc1EG021900 10.0kb upstream 10.0kb upstream 11663 true scaffold_5: 1668448-1680110 Theobroma cacao
Thecc1EG021900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 1668448-1678447 Theobroma cacao
Thecc1EG021900 10.0kb downstream 10.0kb downstream 11663 true scaffold_5: 1678448-1690110 Theobroma cacao
Thecc1EG021900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 1680111-1690110 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123838117 5264 Brassicales-Malvales View MSA
124341456 5266 SBM View MSA
124249586 5268 Malvidae View MSA
124073026 5270 Rosid View MSA
123745848 5271 Pentapetalae View MSA
122795555 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain