Gene : Thecc1EG022084 T. cacao v1.1
Defline:  (1 of 1) PTHR11254//PTHR11254:SF350 - HECT DOMAIN UBIQUITIN-PROTEIN LIGASE // E3 UBIQUITIN-PROTEIN LIGASE UPL4 Genomic Order:  514
Name:  ? Thecc1EG022084 Secondary Identifier:  ? PAC:27422052
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-7511 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG022084 0.5kb upstream 0.5kb upstream 9664 true scaffold_5: 2554331-2563994 Theobroma cacao
Thecc1EG022084 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 2554331-2554830 Theobroma cacao
Thecc1EG022084 0.5kb downstream 0.5kb downstream 9664 true scaffold_5: 2554831-2564494 Theobroma cacao
Thecc1EG022084 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 2563995-2564494 Theobroma cacao
Thecc1EG022084 1.0kb upstream 1.0kb upstream 10164 true scaffold_5: 2553831-2563994 Theobroma cacao
Thecc1EG022084 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 2553831-2554830 Theobroma cacao
Thecc1EG022084 1.0kb downstream 1.0kb downstream 10164 true scaffold_5: 2554831-2564994 Theobroma cacao
Thecc1EG022084 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 2563995-2564994 Theobroma cacao
Thecc1EG022084 2.0kb upstream 2.0kb upstream 11164 true scaffold_5: 2552831-2563994 Theobroma cacao
Thecc1EG022084 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 2552831-2554830 Theobroma cacao
Thecc1EG022084 2.0kb downstream 2.0kb downstream 11164 true scaffold_5: 2554831-2565994 Theobroma cacao
Thecc1EG022084 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 2563995-2565994 Theobroma cacao
Thecc1EG022084 5.0kb upstream 5.0kb upstream 14164 true scaffold_5: 2549831-2563994 Theobroma cacao
Thecc1EG022084 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 2549831-2554830 Theobroma cacao
Thecc1EG022084 5.0kb downstream 5.0kb downstream 14164 true scaffold_5: 2554831-2568994 Theobroma cacao
Thecc1EG022084 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 2563995-2568994 Theobroma cacao
Thecc1EG022084 10.0kb upstream 10.0kb upstream 19164 true scaffold_5: 2544831-2563994 Theobroma cacao
Thecc1EG022084 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 2544831-2554830 Theobroma cacao
Thecc1EG022084 10.0kb downstream 10.0kb downstream 19164 true scaffold_5: 2554831-2573994 Theobroma cacao
Thecc1EG022084 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 2563995-2573994 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123828199 5264 Brassicales-Malvales View MSA
124340114 5266 SBM View MSA
124240618 5268 Malvidae View MSA
124066546 5270 Rosid View MSA
123736938 5271 Pentapetalae View MSA
122796953 5272 Eudicot View MSA
122044351 5273 Angiosperm View MSA
121310283 5274 Embryophyte View MSA
123428406 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain