Gene : Thecc1EG022071 T. cacao v1.1
Defline:  (1 of 45) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  502
Name:  ? Thecc1EG022071 Secondary Identifier:  ? PAC:27424832
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG022071 0.5kb upstream 0.5kb upstream 7384 true scaffold_5: 2475362-2482745 Theobroma cacao
Thecc1EG022071 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 2482246-2482745 Theobroma cacao
Thecc1EG022071 0.5kb downstream 0.5kb downstream 7384 true scaffold_5: 2474862-2482245 Theobroma cacao
Thecc1EG022071 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 2474862-2475361 Theobroma cacao
Thecc1EG022071 1.0kb upstream 1.0kb upstream 7884 true scaffold_5: 2475362-2483245 Theobroma cacao
Thecc1EG022071 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 2482246-2483245 Theobroma cacao
Thecc1EG022071 1.0kb downstream 1.0kb downstream 7884 true scaffold_5: 2474362-2482245 Theobroma cacao
Thecc1EG022071 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 2474362-2475361 Theobroma cacao
Thecc1EG022071 2.0kb upstream 2.0kb upstream 8884 true scaffold_5: 2475362-2484245 Theobroma cacao
Thecc1EG022071 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 2482246-2484245 Theobroma cacao
Thecc1EG022071 2.0kb downstream 2.0kb downstream 8884 true scaffold_5: 2473362-2482245 Theobroma cacao
Thecc1EG022071 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 2473362-2475361 Theobroma cacao
Thecc1EG022071 5.0kb upstream 5.0kb upstream 11884 true scaffold_5: 2475362-2487245 Theobroma cacao
Thecc1EG022071 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 2482246-2487245 Theobroma cacao
Thecc1EG022071 5.0kb downstream 5.0kb downstream 11884 true scaffold_5: 2470362-2482245 Theobroma cacao
Thecc1EG022071 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 2470362-2475361 Theobroma cacao
Thecc1EG022071 10.0kb upstream 10.0kb upstream 16884 true scaffold_5: 2475362-2492245 Theobroma cacao
Thecc1EG022071 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 2482246-2492245 Theobroma cacao
Thecc1EG022071 10.0kb downstream 10.0kb downstream 16884 true scaffold_5: 2465362-2482245 Theobroma cacao
Thecc1EG022071 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 2465362-2475361 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123830393 5264 Brassicales-Malvales View MSA
124336842 5266 SBM View MSA
124241892 5268 Malvidae View MSA
124068015 5270 Rosid View MSA
123738487 5271 Pentapetalae View MSA
122789712 5272 Eudicot View MSA
122044126 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121347187 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain