Gene : Thecc1EG022004 T. cacao v1.1
Defline:  (1 of 1) K01778 - diaminopimelate epimerase (dapF) Genomic Order:  441
Name:  ? Thecc1EG022004 Secondary Identifier:  ? PAC:27420815
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-5097 Theobroma cacao pathologic  
Tcacao PWY-724 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG022004 0.5kb upstream 0.5kb upstream 3524 true scaffold_5: 2181286-2184809 Theobroma cacao
Thecc1EG022004 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 2184310-2184809 Theobroma cacao
Thecc1EG022004 0.5kb downstream 0.5kb downstream 3524 true scaffold_5: 2180786-2184309 Theobroma cacao
Thecc1EG022004 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 2180786-2181285 Theobroma cacao
Thecc1EG022004 1.0kb upstream 1.0kb upstream 4024 true scaffold_5: 2181286-2185309 Theobroma cacao
Thecc1EG022004 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 2184310-2185309 Theobroma cacao
Thecc1EG022004 1.0kb downstream 1.0kb downstream 4024 true scaffold_5: 2180286-2184309 Theobroma cacao
Thecc1EG022004 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 2180286-2181285 Theobroma cacao
Thecc1EG022004 2.0kb upstream 2.0kb upstream 5024 true scaffold_5: 2181286-2186309 Theobroma cacao
Thecc1EG022004 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 2184310-2186309 Theobroma cacao
Thecc1EG022004 2.0kb downstream 2.0kb downstream 5024 true scaffold_5: 2179286-2184309 Theobroma cacao
Thecc1EG022004 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 2179286-2181285 Theobroma cacao
Thecc1EG022004 5.0kb upstream 5.0kb upstream 8024 true scaffold_5: 2181286-2189309 Theobroma cacao
Thecc1EG022004 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 2184310-2189309 Theobroma cacao
Thecc1EG022004 5.0kb downstream 5.0kb downstream 8024 true scaffold_5: 2176286-2184309 Theobroma cacao
Thecc1EG022004 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 2176286-2181285 Theobroma cacao
Thecc1EG022004 10.0kb upstream 10.0kb upstream 13024 true scaffold_5: 2181286-2194309 Theobroma cacao
Thecc1EG022004 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 2184310-2194309 Theobroma cacao
Thecc1EG022004 10.0kb downstream 10.0kb downstream 13024 true scaffold_5: 2171286-2184309 Theobroma cacao
Thecc1EG022004 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 2171286-2181285 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123838616 5264 Brassicales-Malvales View MSA
124341400 5266 SBM View MSA
124243364 5268 Malvidae View MSA
124061653 5270 Rosid View MSA
123740208 5271 Pentapetalae View MSA
122785704 5272 Eudicot View MSA
122047257 5273 Angiosperm View MSA
121347599 5274 Embryophyte View MSA
123423863 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain