Gene : Thecc1EG022236 T. cacao v1.1
Defline:  (1 of 1) PTHR11476//PTHR11476:SF5 - HISTIDYL-TRNA SYNTHETASE // CLASS II AARS AND BIOTIN SYNTHETASES SUPERFAMILY PROTEIN-RELATED Genomic Order:  641
Name:  ? Thecc1EG022236 Secondary Identifier:  ? PAC:27423140
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao TRNA-CHARGING-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG022236 0.5kb upstream 0.5kb upstream 6908 true scaffold_5: 3307985-3314892 Theobroma cacao
Thecc1EG022236 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 3307985-3308484 Theobroma cacao
Thecc1EG022236 0.5kb downstream 0.5kb downstream 6908 true scaffold_5: 3308485-3315392 Theobroma cacao
Thecc1EG022236 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 3314893-3315392 Theobroma cacao
Thecc1EG022236 1.0kb upstream 1.0kb upstream 7408 true scaffold_5: 3307485-3314892 Theobroma cacao
Thecc1EG022236 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 3307485-3308484 Theobroma cacao
Thecc1EG022236 1.0kb downstream 1.0kb downstream 7408 true scaffold_5: 3308485-3315892 Theobroma cacao
Thecc1EG022236 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 3314893-3315892 Theobroma cacao
Thecc1EG022236 2.0kb upstream 2.0kb upstream 8408 true scaffold_5: 3306485-3314892 Theobroma cacao
Thecc1EG022236 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 3306485-3308484 Theobroma cacao
Thecc1EG022236 2.0kb downstream 2.0kb downstream 8408 true scaffold_5: 3308485-3316892 Theobroma cacao
Thecc1EG022236 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 3314893-3316892 Theobroma cacao
Thecc1EG022236 5.0kb upstream 5.0kb upstream 11408 true scaffold_5: 3303485-3314892 Theobroma cacao
Thecc1EG022236 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 3303485-3308484 Theobroma cacao
Thecc1EG022236 5.0kb downstream 5.0kb downstream 11408 true scaffold_5: 3308485-3319892 Theobroma cacao
Thecc1EG022236 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 3314893-3319892 Theobroma cacao
Thecc1EG022236 10.0kb upstream 10.0kb upstream 16408 true scaffold_5: 3298485-3314892 Theobroma cacao
Thecc1EG022236 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 3298485-3308484 Theobroma cacao
Thecc1EG022236 10.0kb downstream 10.0kb downstream 16408 true scaffold_5: 3308485-3324892 Theobroma cacao
Thecc1EG022236 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 3314893-3324892 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123828027 5264 Brassicales-Malvales View MSA
124321502 5266 SBM View MSA
124242032 5268 Malvidae View MSA
124069172 5270 Rosid View MSA
123739559 5271 Pentapetalae View MSA
122792579 5272 Eudicot View MSA
122042038 5273 Angiosperm View MSA
121344697 5274 Embryophyte View MSA
123424484 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain