Gene : Thecc1EG022180 T. cacao v1.1
Defline:  (1 of 3) K00030 - isocitrate dehydrogenase (NAD+) (IDH3) Genomic Order:  595
Name:  ? Thecc1EG022180 Secondary Identifier:  ? PAC:27422351
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-5464 Theobroma cacao pathologic  
Tcacao PWY-5690 Theobroma cacao pathologic  
Tcacao PWY-6549 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG022180 0.5kb upstream 0.5kb upstream 3465 true scaffold_5: 3025859-3029323 Theobroma cacao
Thecc1EG022180 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 3025859-3026358 Theobroma cacao
Thecc1EG022180 0.5kb downstream 0.5kb downstream 3465 true scaffold_5: 3026359-3029823 Theobroma cacao
Thecc1EG022180 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 3029324-3029823 Theobroma cacao
Thecc1EG022180 1.0kb upstream 1.0kb upstream 3965 true scaffold_5: 3025359-3029323 Theobroma cacao
Thecc1EG022180 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 3025359-3026358 Theobroma cacao
Thecc1EG022180 1.0kb downstream 1.0kb downstream 3965 true scaffold_5: 3026359-3030323 Theobroma cacao
Thecc1EG022180 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 3029324-3030323 Theobroma cacao
Thecc1EG022180 2.0kb upstream 2.0kb upstream 4965 true scaffold_5: 3024359-3029323 Theobroma cacao
Thecc1EG022180 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 3024359-3026358 Theobroma cacao
Thecc1EG022180 2.0kb downstream 2.0kb downstream 4965 true scaffold_5: 3026359-3031323 Theobroma cacao
Thecc1EG022180 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 3029324-3031323 Theobroma cacao
Thecc1EG022180 5.0kb upstream 5.0kb upstream 7965 true scaffold_5: 3021359-3029323 Theobroma cacao
Thecc1EG022180 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 3021359-3026358 Theobroma cacao
Thecc1EG022180 5.0kb downstream 5.0kb downstream 7965 true scaffold_5: 3026359-3034323 Theobroma cacao
Thecc1EG022180 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 3029324-3034323 Theobroma cacao
Thecc1EG022180 10.0kb upstream 10.0kb upstream 12965 true scaffold_5: 3016359-3029323 Theobroma cacao
Thecc1EG022180 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 3016359-3026358 Theobroma cacao
Thecc1EG022180 10.0kb downstream 10.0kb downstream 12965 true scaffold_5: 3026359-3039323 Theobroma cacao
Thecc1EG022180 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 3029324-3039323 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123834556 5264 Brassicales-Malvales View MSA
124340009 5266 SBM View MSA
124251295 5268 Malvidae View MSA
124066571 5270 Rosid View MSA
123739712 5271 Pentapetalae View MSA
122792664 5272 Eudicot View MSA
122041698 5273 Angiosperm View MSA
121349734 5274 Embryophyte View MSA
123425496 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain