Gene : Pavir.9KG180400 P. virgatum v4.1
Defline:  (1 of 3) PTHR11877//PTHR11877:SF25 - HYDROXYMETHYLGLUTARYL-COA SYNTHASE // SUBFAMILY NOT NAMED Genomic Order:  1459
Name:  ? Pavir.9KG180400 Secondary Identifier:  ? PAC:37670597
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum PWY1F-FLAVSYN Panicum virgatum pathologic  
Pvirgatum PWY-6787 Panicum virgatum pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.9KG180400 0.5kb upstream 0.5kb upstream 2724 true Chr09K: 17192890-17195613 Panicum virgatum
Pavir.9KG180400 0.5kb upstream 0.5kb upstream 500 false Chr09K: 17195114-17195613 Panicum virgatum
Pavir.9KG180400 0.5kb downstream 0.5kb downstream 2724 true Chr09K: 17192390-17195113 Panicum virgatum
Pavir.9KG180400 0.5kb downstream 0.5kb downstream 500 false Chr09K: 17192390-17192889 Panicum virgatum
Pavir.9KG180400 1.0kb upstream 1.0kb upstream 3224 true Chr09K: 17192890-17196113 Panicum virgatum
Pavir.9KG180400 1.0kb upstream 1.0kb upstream 1000 false Chr09K: 17195114-17196113 Panicum virgatum
Pavir.9KG180400 1.0kb downstream 1.0kb downstream 3224 true Chr09K: 17191890-17195113 Panicum virgatum
Pavir.9KG180400 1.0kb downstream 1.0kb downstream 1000 false Chr09K: 17191890-17192889 Panicum virgatum
Pavir.9KG180400 2.0kb upstream 2.0kb upstream 4224 true Chr09K: 17192890-17197113 Panicum virgatum
Pavir.9KG180400 2.0kb upstream 2.0kb upstream 2000 false Chr09K: 17195114-17197113 Panicum virgatum
Pavir.9KG180400 2.0kb downstream 2.0kb downstream 4224 true Chr09K: 17190890-17195113 Panicum virgatum
Pavir.9KG180400 2.0kb downstream 2.0kb downstream 2000 false Chr09K: 17190890-17192889 Panicum virgatum
Pavir.9KG180400 5.0kb upstream 5.0kb upstream 7224 true Chr09K: 17192890-17200113 Panicum virgatum
Pavir.9KG180400 5.0kb upstream 5.0kb upstream 5000 false Chr09K: 17195114-17200113 Panicum virgatum
Pavir.9KG180400 5.0kb downstream 5.0kb downstream 7224 true Chr09K: 17187890-17195113 Panicum virgatum
Pavir.9KG180400 5.0kb downstream 5.0kb downstream 5000 false Chr09K: 17187890-17192889 Panicum virgatum
Pavir.9KG180400 10.0kb upstream 10.0kb upstream 12224 true Chr09K: 17192890-17205113 Panicum virgatum
Pavir.9KG180400 10.0kb upstream 10.0kb upstream 10000 false Chr09K: 17195114-17205113 Panicum virgatum
Pavir.9KG180400 10.0kb downstream 10.0kb downstream 12224 true Chr09K: 17182890-17195113 Panicum virgatum
Pavir.9KG180400 10.0kb downstream 10.0kb downstream 10000 false Chr09K: 17182890-17192889 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122104807 5267 Panicoideae Singleton cluster - no MSA
124401049 5269 Grass Singleton cluster - no MSA
122045794 5273 Angiosperm View MSA
121348952 5274 Embryophyte View MSA
123428386 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain