Gene : Pavir.9KG357600 P. virgatum v4.1
Defline:  (1 of 1) KOG0962//KOG0978 - DNA repair protein RAD50, ABC-type ATPase/SMC superfamily // E3 ubiquitin ligase involved in syntaxin degradation Genomic Order:  2650
Name:  ? Pavir.9KG357600 Secondary Identifier:  ? PAC:37672755
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.9KG357600 0.5kb upstream 0.5kb upstream 12481 true Chr09K: 44275136-44287616 Panicum virgatum
Pavir.9KG357600 0.5kb upstream 0.5kb upstream 500 false Chr09K: 44275136-44275635 Panicum virgatum
Pavir.9KG357600 0.5kb downstream 0.5kb downstream 12481 true Chr09K: 44275636-44288116 Panicum virgatum
Pavir.9KG357600 0.5kb downstream 0.5kb downstream 500 false Chr09K: 44287617-44288116 Panicum virgatum
Pavir.9KG357600 1.0kb upstream 1.0kb upstream 12981 true Chr09K: 44274636-44287616 Panicum virgatum
Pavir.9KG357600 1.0kb upstream 1.0kb upstream 1000 false Chr09K: 44274636-44275635 Panicum virgatum
Pavir.9KG357600 1.0kb downstream 1.0kb downstream 12981 true Chr09K: 44275636-44288616 Panicum virgatum
Pavir.9KG357600 1.0kb downstream 1.0kb downstream 1000 false Chr09K: 44287617-44288616 Panicum virgatum
Pavir.9KG357600 2.0kb upstream 2.0kb upstream 13981 true Chr09K: 44273636-44287616 Panicum virgatum
Pavir.9KG357600 2.0kb upstream 2.0kb upstream 2000 false Chr09K: 44273636-44275635 Panicum virgatum
Pavir.9KG357600 2.0kb downstream 2.0kb downstream 13981 true Chr09K: 44275636-44289616 Panicum virgatum
Pavir.9KG357600 2.0kb downstream 2.0kb downstream 2000 false Chr09K: 44287617-44289616 Panicum virgatum
Pavir.9KG357600 5.0kb upstream 5.0kb upstream 16981 true Chr09K: 44270636-44287616 Panicum virgatum
Pavir.9KG357600 5.0kb upstream 5.0kb upstream 5000 false Chr09K: 44270636-44275635 Panicum virgatum
Pavir.9KG357600 5.0kb downstream 5.0kb downstream 16981 true Chr09K: 44275636-44292616 Panicum virgatum
Pavir.9KG357600 5.0kb downstream 5.0kb downstream 5000 false Chr09K: 44287617-44292616 Panicum virgatum
Pavir.9KG357600 10.0kb upstream 10.0kb upstream 21981 true Chr09K: 44265636-44287616 Panicum virgatum
Pavir.9KG357600 10.0kb upstream 10.0kb upstream 10000 false Chr09K: 44265636-44275635 Panicum virgatum
Pavir.9KG357600 10.0kb downstream 10.0kb downstream 21981 true Chr09K: 44275636-44297616 Panicum virgatum
Pavir.9KG357600 10.0kb downstream 10.0kb downstream 10000 false Chr09K: 44287617-44297616 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122105345 5267 Panicoideae Singleton cluster - no MSA
124582435 5269 Grass View MSA
122048313 5273 Angiosperm View MSA
121348283 5274 Embryophyte View MSA
123428094 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain