Gene : Thecc1EG022701 T. cacao v1.1
Defline:  (1 of 1) PTHR23083//PTHR23083:SF397 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR // UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED Genomic Order:  925
Name:  ? Thecc1EG022701 Secondary Identifier:  ? PAC:27422004
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-7437 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG022701 0.5kb upstream 0.5kb upstream 11330 true scaffold_5: 6728458-6739787 Theobroma cacao
Thecc1EG022701 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 6728458-6728957 Theobroma cacao
Thecc1EG022701 0.5kb downstream 0.5kb downstream 11330 true scaffold_5: 6728958-6740287 Theobroma cacao
Thecc1EG022701 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 6739788-6740287 Theobroma cacao
Thecc1EG022701 1.0kb upstream 1.0kb upstream 11830 true scaffold_5: 6727958-6739787 Theobroma cacao
Thecc1EG022701 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 6727958-6728957 Theobroma cacao
Thecc1EG022701 1.0kb downstream 1.0kb downstream 11830 true scaffold_5: 6728958-6740787 Theobroma cacao
Thecc1EG022701 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 6739788-6740787 Theobroma cacao
Thecc1EG022701 2.0kb upstream 2.0kb upstream 12830 true scaffold_5: 6726958-6739787 Theobroma cacao
Thecc1EG022701 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 6726958-6728957 Theobroma cacao
Thecc1EG022701 2.0kb downstream 2.0kb downstream 12830 true scaffold_5: 6728958-6741787 Theobroma cacao
Thecc1EG022701 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 6739788-6741787 Theobroma cacao
Thecc1EG022701 5.0kb upstream 5.0kb upstream 15830 true scaffold_5: 6723958-6739787 Theobroma cacao
Thecc1EG022701 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 6723958-6728957 Theobroma cacao
Thecc1EG022701 5.0kb downstream 5.0kb downstream 15830 true scaffold_5: 6728958-6744787 Theobroma cacao
Thecc1EG022701 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 6739788-6744787 Theobroma cacao
Thecc1EG022701 10.0kb upstream 10.0kb upstream 20830 true scaffold_5: 6718958-6739787 Theobroma cacao
Thecc1EG022701 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 6718958-6728957 Theobroma cacao
Thecc1EG022701 10.0kb downstream 10.0kb downstream 20830 true scaffold_5: 6728958-6749787 Theobroma cacao
Thecc1EG022701 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 6739788-6749787 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123839299 5264 Brassicales-Malvales View MSA
124342319 5266 SBM View MSA
124237438 5268 Malvidae View MSA
124065064 5270 Rosid View MSA
123739134 5271 Pentapetalae View MSA
122791595 5272 Eudicot View MSA
122044417 5273 Angiosperm View MSA
121347707 5274 Embryophyte View MSA
123428836 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain