Gene : Thecc1EG022648 T. cacao v1.1
Defline:  (1 of 1) PF00076//PF03171//PF14226 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // 2OG-Fe(II) oxygenase superfamily (2OG-FeII_Oxy) // non-haem dioxygenase in morphine synthesis N-terminal (DIOX_N) Genomic Order:  902
Name:  ? Thecc1EG022648 Secondary Identifier:  ? PAC:27421546
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG022648 0.5kb upstream 0.5kb upstream 5562 true scaffold_5: 6253145-6258706 Theobroma cacao
Thecc1EG022648 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 6253145-6253644 Theobroma cacao
Thecc1EG022648 0.5kb downstream 0.5kb downstream 5562 true scaffold_5: 6253645-6259206 Theobroma cacao
Thecc1EG022648 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 6258707-6259206 Theobroma cacao
Thecc1EG022648 1.0kb upstream 1.0kb upstream 6062 true scaffold_5: 6252645-6258706 Theobroma cacao
Thecc1EG022648 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 6252645-6253644 Theobroma cacao
Thecc1EG022648 1.0kb downstream 1.0kb downstream 6062 true scaffold_5: 6253645-6259706 Theobroma cacao
Thecc1EG022648 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 6258707-6259706 Theobroma cacao
Thecc1EG022648 2.0kb upstream 2.0kb upstream 7062 true scaffold_5: 6251645-6258706 Theobroma cacao
Thecc1EG022648 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 6251645-6253644 Theobroma cacao
Thecc1EG022648 2.0kb downstream 2.0kb downstream 7062 true scaffold_5: 6253645-6260706 Theobroma cacao
Thecc1EG022648 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 6258707-6260706 Theobroma cacao
Thecc1EG022648 5.0kb upstream 5.0kb upstream 10062 true scaffold_5: 6248645-6258706 Theobroma cacao
Thecc1EG022648 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 6248645-6253644 Theobroma cacao
Thecc1EG022648 5.0kb downstream 5.0kb downstream 10062 true scaffold_5: 6253645-6263706 Theobroma cacao
Thecc1EG022648 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 6258707-6263706 Theobroma cacao
Thecc1EG022648 10.0kb upstream 10.0kb upstream 15062 true scaffold_5: 6243645-6258706 Theobroma cacao
Thecc1EG022648 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 6243645-6253644 Theobroma cacao
Thecc1EG022648 10.0kb downstream 10.0kb downstream 15062 true scaffold_5: 6253645-6268706 Theobroma cacao
Thecc1EG022648 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 6258707-6268706 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123842056 5264 Brassicales-Malvales View MSA
124323213 5266 SBM View MSA
124249176 5268 Malvidae View MSA
124071640 5270 Rosid View MSA
123753505 5271 Pentapetalae View MSA
122796711 5272 Eudicot View MSA
122051611 5273 Angiosperm View MSA
123429101 5275 Viridiplantae View MSA
121351374 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain