Gene : Pavir.5NG180000 P. virgatum v4.1
Defline:  (1 of 2) PTHR10277//PTHR10277:SF41 - HOMOCITRATE SYNTHASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1630
Name:  ? Pavir.5NG180000 Secondary Identifier:  ? PAC:37576789
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum LEU-DEG2-PWY Panicum virgatum pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.5NG180000 0.5kb upstream 0.5kb upstream 10827 true Chr05N: 22307914-22318740 Panicum virgatum
Pavir.5NG180000 0.5kb upstream 0.5kb upstream 500 false Chr05N: 22318241-22318740 Panicum virgatum
Pavir.5NG180000 0.5kb downstream 0.5kb downstream 10827 true Chr05N: 22307414-22318240 Panicum virgatum
Pavir.5NG180000 0.5kb downstream 0.5kb downstream 500 false Chr05N: 22307414-22307913 Panicum virgatum
Pavir.5NG180000 1.0kb upstream 1.0kb upstream 11327 true Chr05N: 22307914-22319240 Panicum virgatum
Pavir.5NG180000 1.0kb upstream 1.0kb upstream 1000 false Chr05N: 22318241-22319240 Panicum virgatum
Pavir.5NG180000 1.0kb downstream 1.0kb downstream 11327 true Chr05N: 22306914-22318240 Panicum virgatum
Pavir.5NG180000 1.0kb downstream 1.0kb downstream 1000 false Chr05N: 22306914-22307913 Panicum virgatum
Pavir.5NG180000 2.0kb upstream 2.0kb upstream 12327 true Chr05N: 22307914-22320240 Panicum virgatum
Pavir.5NG180000 2.0kb upstream 2.0kb upstream 2000 false Chr05N: 22318241-22320240 Panicum virgatum
Pavir.5NG180000 2.0kb downstream 2.0kb downstream 12327 true Chr05N: 22305914-22318240 Panicum virgatum
Pavir.5NG180000 2.0kb downstream 2.0kb downstream 2000 false Chr05N: 22305914-22307913 Panicum virgatum
Pavir.5NG180000 5.0kb upstream 5.0kb upstream 15327 true Chr05N: 22307914-22323240 Panicum virgatum
Pavir.5NG180000 5.0kb upstream 5.0kb upstream 5000 false Chr05N: 22318241-22323240 Panicum virgatum
Pavir.5NG180000 5.0kb downstream 5.0kb downstream 15327 true Chr05N: 22302914-22318240 Panicum virgatum
Pavir.5NG180000 5.0kb downstream 5.0kb downstream 5000 false Chr05N: 22302914-22307913 Panicum virgatum
Pavir.5NG180000 10.0kb upstream 10.0kb upstream 20327 true Chr05N: 22307914-22328240 Panicum virgatum
Pavir.5NG180000 10.0kb upstream 10.0kb upstream 10000 false Chr05N: 22318241-22328240 Panicum virgatum
Pavir.5NG180000 10.0kb downstream 10.0kb downstream 20327 true Chr05N: 22297914-22318240 Panicum virgatum
Pavir.5NG180000 10.0kb downstream 10.0kb downstream 10000 false Chr05N: 22297914-22307913 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195839 5267 Panicoideae View MSA
124575299 5269 Grass View MSA
122045409 5273 Angiosperm View MSA
121347999 5274 Embryophyte View MSA
123426187 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain