Gene : Pavir.5NG221600 P. virgatum v4.1
Defline:  (1 of 2) K11547 - kinetochore protein NDC80 (NDC80, HEC1, TID3) Genomic Order:  2007
Name:  ? Pavir.5NG221600 Secondary Identifier:  ? PAC:37574677
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20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.5NG221600 0.5kb upstream 0.5kb upstream 9973 true Chr05N: 28538527-28548499 Panicum virgatum
Pavir.5NG221600 0.5kb upstream 0.5kb upstream 500 false Chr05N: 28538527-28539026 Panicum virgatum
Pavir.5NG221600 0.5kb downstream 0.5kb downstream 9973 true Chr05N: 28539027-28548999 Panicum virgatum
Pavir.5NG221600 0.5kb downstream 0.5kb downstream 500 false Chr05N: 28548500-28548999 Panicum virgatum
Pavir.5NG221600 1.0kb upstream 1.0kb upstream 10473 true Chr05N: 28538027-28548499 Panicum virgatum
Pavir.5NG221600 1.0kb upstream 1.0kb upstream 1000 false Chr05N: 28538027-28539026 Panicum virgatum
Pavir.5NG221600 1.0kb downstream 1.0kb downstream 10473 true Chr05N: 28539027-28549499 Panicum virgatum
Pavir.5NG221600 1.0kb downstream 1.0kb downstream 1000 false Chr05N: 28548500-28549499 Panicum virgatum
Pavir.5NG221600 2.0kb upstream 2.0kb upstream 11473 true Chr05N: 28537027-28548499 Panicum virgatum
Pavir.5NG221600 2.0kb upstream 2.0kb upstream 2000 false Chr05N: 28537027-28539026 Panicum virgatum
Pavir.5NG221600 2.0kb downstream 2.0kb downstream 11473 true Chr05N: 28539027-28550499 Panicum virgatum
Pavir.5NG221600 2.0kb downstream 2.0kb downstream 2000 false Chr05N: 28548500-28550499 Panicum virgatum
Pavir.5NG221600 5.0kb upstream 5.0kb upstream 14473 true Chr05N: 28534027-28548499 Panicum virgatum
Pavir.5NG221600 5.0kb upstream 5.0kb upstream 5000 false Chr05N: 28534027-28539026 Panicum virgatum
Pavir.5NG221600 5.0kb downstream 5.0kb downstream 14473 true Chr05N: 28539027-28553499 Panicum virgatum
Pavir.5NG221600 5.0kb downstream 5.0kb downstream 5000 false Chr05N: 28548500-28553499 Panicum virgatum
Pavir.5NG221600 10.0kb upstream 10.0kb upstream 19473 true Chr05N: 28529027-28548499 Panicum virgatum
Pavir.5NG221600 10.0kb upstream 10.0kb upstream 10000 false Chr05N: 28529027-28539026 Panicum virgatum
Pavir.5NG221600 10.0kb downstream 10.0kb downstream 19473 true Chr05N: 28539027-28558499 Panicum virgatum
Pavir.5NG221600 10.0kb downstream 10.0kb downstream 10000 false Chr05N: 28548500-28558499 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122079085 5267 Panicoideae Singleton cluster - no MSA
124584363 5269 Grass View MSA
122049067 5273 Angiosperm View MSA
121344778 5274 Embryophyte View MSA
123428580 5275 Viridiplantae View MSA

0 Rna Seq Expressions

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