Gene : Thecc1EG023422 T. cacao v1.1
Defline:  (1 of 139) PF03732 - Retrotransposon gag protein (Retrotrans_gag) Genomic Order:  1128
Name:  ? Thecc1EG023422 Secondary Identifier:  ? PAC:27421576
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG023422 0.5kb upstream 0.5kb upstream 7764 true scaffold_5: 13918187-13925950 Theobroma cacao
Thecc1EG023422 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 13918187-13918686 Theobroma cacao
Thecc1EG023422 0.5kb downstream 0.5kb downstream 7764 true scaffold_5: 13918687-13926450 Theobroma cacao
Thecc1EG023422 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 13925951-13926450 Theobroma cacao
Thecc1EG023422 1.0kb upstream 1.0kb upstream 8264 true scaffold_5: 13917687-13925950 Theobroma cacao
Thecc1EG023422 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 13917687-13918686 Theobroma cacao
Thecc1EG023422 1.0kb downstream 1.0kb downstream 8264 true scaffold_5: 13918687-13926950 Theobroma cacao
Thecc1EG023422 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 13925951-13926950 Theobroma cacao
Thecc1EG023422 2.0kb upstream 2.0kb upstream 9264 true scaffold_5: 13916687-13925950 Theobroma cacao
Thecc1EG023422 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 13916687-13918686 Theobroma cacao
Thecc1EG023422 2.0kb downstream 2.0kb downstream 9264 true scaffold_5: 13918687-13927950 Theobroma cacao
Thecc1EG023422 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 13925951-13927950 Theobroma cacao
Thecc1EG023422 5.0kb upstream 5.0kb upstream 12264 true scaffold_5: 13913687-13925950 Theobroma cacao
Thecc1EG023422 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 13913687-13918686 Theobroma cacao
Thecc1EG023422 5.0kb downstream 5.0kb downstream 12264 true scaffold_5: 13918687-13930950 Theobroma cacao
Thecc1EG023422 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 13925951-13930950 Theobroma cacao
Thecc1EG023422 10.0kb upstream 10.0kb upstream 17264 true scaffold_5: 13908687-13925950 Theobroma cacao
Thecc1EG023422 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 13908687-13918686 Theobroma cacao
Thecc1EG023422 10.0kb downstream 10.0kb downstream 17264 true scaffold_5: 13918687-13935950 Theobroma cacao
Thecc1EG023422 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 13925951-13935950 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121782018 5273 Angiosperm View MSA
123823847 5264 Brassicales-Malvales View MSA
124319901 5266 SBM View MSA
124168402 5268 Malvidae View MSA
123891799 5270 Rosid View MSA
123751591 5271 Pentapetalae View MSA
122774090 5272 Eudicot View MSA
121053563 5274 Embryophyte View MSA
123093580 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain