Gene : Pavir.5NG200800 P. virgatum v4.1
Defline:  (1 of 3) PTHR12526:SF304 - STARCH SYNTHASE 4, CHLOROPLASTIC/AMYLOPLASTIC-RELATED Genomic Order:  1815
Name:  ? Pavir.5NG200800 Secondary Identifier:  ? PAC:37574870
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum GLYCOGENSYNTH-PWY Panicum virgatum pathologic  
Pvirgatum PWY-622 Panicum virgatum pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.5NG200800 0.5kb upstream 0.5kb upstream 7549 true Chr05N: 26063332-26070880 Panicum virgatum
Pavir.5NG200800 0.5kb upstream 0.5kb upstream 500 false Chr05N: 26063332-26063831 Panicum virgatum
Pavir.5NG200800 0.5kb downstream 0.5kb downstream 7549 true Chr05N: 26063832-26071380 Panicum virgatum
Pavir.5NG200800 0.5kb downstream 0.5kb downstream 500 false Chr05N: 26070881-26071380 Panicum virgatum
Pavir.5NG200800 1.0kb upstream 1.0kb upstream 8049 true Chr05N: 26062832-26070880 Panicum virgatum
Pavir.5NG200800 1.0kb upstream 1.0kb upstream 1000 false Chr05N: 26062832-26063831 Panicum virgatum
Pavir.5NG200800 1.0kb downstream 1.0kb downstream 8049 true Chr05N: 26063832-26071880 Panicum virgatum
Pavir.5NG200800 1.0kb downstream 1.0kb downstream 1000 false Chr05N: 26070881-26071880 Panicum virgatum
Pavir.5NG200800 2.0kb upstream 2.0kb upstream 9049 true Chr05N: 26061832-26070880 Panicum virgatum
Pavir.5NG200800 2.0kb upstream 2.0kb upstream 2000 false Chr05N: 26061832-26063831 Panicum virgatum
Pavir.5NG200800 2.0kb downstream 2.0kb downstream 9049 true Chr05N: 26063832-26072880 Panicum virgatum
Pavir.5NG200800 2.0kb downstream 2.0kb downstream 2000 false Chr05N: 26070881-26072880 Panicum virgatum
Pavir.5NG200800 5.0kb upstream 5.0kb upstream 12049 true Chr05N: 26058832-26070880 Panicum virgatum
Pavir.5NG200800 5.0kb upstream 5.0kb upstream 5000 false Chr05N: 26058832-26063831 Panicum virgatum
Pavir.5NG200800 5.0kb downstream 5.0kb downstream 12049 true Chr05N: 26063832-26075880 Panicum virgatum
Pavir.5NG200800 5.0kb downstream 5.0kb downstream 5000 false Chr05N: 26070881-26075880 Panicum virgatum
Pavir.5NG200800 10.0kb upstream 10.0kb upstream 17049 true Chr05N: 26053832-26070880 Panicum virgatum
Pavir.5NG200800 10.0kb upstream 10.0kb upstream 10000 false Chr05N: 26053832-26063831 Panicum virgatum
Pavir.5NG200800 10.0kb downstream 10.0kb downstream 17049 true Chr05N: 26063832-26080880 Panicum virgatum
Pavir.5NG200800 10.0kb downstream 10.0kb downstream 10000 false Chr05N: 26070881-26080880 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189391 5267 Panicoideae View MSA
124578861 5269 Grass View MSA
122042885 5273 Angiosperm View MSA
121344527 5274 Embryophyte View MSA
123428648 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain