Gene : Pavir.5NG371300 P. virgatum v4.1
Defline:  (1 of 2) 5.5.1.18 - Lycopene epsilon-cyclase Genomic Order:  2806
Name:  ? Pavir.5NG371300 Secondary Identifier:  ? PAC:37578005
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum CAROTENOID-PWY Panicum virgatum pathologic  
Pvirgatum PWY-5175 Panicum virgatum pathologic  
Pvirgatum PWY-5946 Panicum virgatum pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.5NG371300 0.5kb upstream 0.5kb upstream 4228 true Chr05N: 50871404-50875631 Panicum virgatum
Pavir.5NG371300 0.5kb upstream 0.5kb upstream 500 false Chr05N: 50871404-50871903 Panicum virgatum
Pavir.5NG371300 0.5kb downstream 0.5kb downstream 4228 true Chr05N: 50871904-50876131 Panicum virgatum
Pavir.5NG371300 0.5kb downstream 0.5kb downstream 500 false Chr05N: 50875632-50876131 Panicum virgatum
Pavir.5NG371300 1.0kb upstream 1.0kb upstream 4728 true Chr05N: 50870904-50875631 Panicum virgatum
Pavir.5NG371300 1.0kb upstream 1.0kb upstream 1000 false Chr05N: 50870904-50871903 Panicum virgatum
Pavir.5NG371300 1.0kb downstream 1.0kb downstream 4728 true Chr05N: 50871904-50876631 Panicum virgatum
Pavir.5NG371300 1.0kb downstream 1.0kb downstream 1000 false Chr05N: 50875632-50876631 Panicum virgatum
Pavir.5NG371300 2.0kb upstream 2.0kb upstream 5728 true Chr05N: 50869904-50875631 Panicum virgatum
Pavir.5NG371300 2.0kb upstream 2.0kb upstream 2000 false Chr05N: 50869904-50871903 Panicum virgatum
Pavir.5NG371300 2.0kb downstream 2.0kb downstream 5728 true Chr05N: 50871904-50877631 Panicum virgatum
Pavir.5NG371300 2.0kb downstream 2.0kb downstream 2000 false Chr05N: 50875632-50877631 Panicum virgatum
Pavir.5NG371300 5.0kb upstream 5.0kb upstream 8728 true Chr05N: 50866904-50875631 Panicum virgatum
Pavir.5NG371300 5.0kb upstream 5.0kb upstream 5000 false Chr05N: 50866904-50871903 Panicum virgatum
Pavir.5NG371300 5.0kb downstream 5.0kb downstream 8728 true Chr05N: 50871904-50880631 Panicum virgatum
Pavir.5NG371300 5.0kb downstream 5.0kb downstream 5000 false Chr05N: 50875632-50880631 Panicum virgatum
Pavir.5NG371300 10.0kb upstream 10.0kb upstream 13728 true Chr05N: 50861904-50875631 Panicum virgatum
Pavir.5NG371300 10.0kb upstream 10.0kb upstream 10000 false Chr05N: 50861904-50871903 Panicum virgatum
Pavir.5NG371300 10.0kb downstream 10.0kb downstream 13728 true Chr05N: 50871904-50885631 Panicum virgatum
Pavir.5NG371300 10.0kb downstream 10.0kb downstream 10000 false Chr05N: 50875632-50885631 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192345 5267 Panicoideae View MSA
124575258 5269 Grass View MSA
122041543 5273 Angiosperm View MSA
121345455 5274 Embryophyte View MSA
123424108 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain