Gene : Pavir.5NG500100 P. virgatum v4.1
Defline:  (1 of 1) K00748 - lipid-A-disaccharide synthase (lpxB) Genomic Order:  4533
Name:  ? Pavir.5NG500100 Secondary Identifier:  ? PAC:37572045
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum NAGLIPASYN-PWY Panicum virgatum pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.5NG500100 0.5kb upstream 0.5kb upstream 7689 true Chr05N: 86731698-86739386 Panicum virgatum
Pavir.5NG500100 0.5kb upstream 0.5kb upstream 500 false Chr05N: 86738887-86739386 Panicum virgatum
Pavir.5NG500100 0.5kb downstream 0.5kb downstream 7689 true Chr05N: 86731198-86738886 Panicum virgatum
Pavir.5NG500100 0.5kb downstream 0.5kb downstream 500 false Chr05N: 86731198-86731697 Panicum virgatum
Pavir.5NG500100 1.0kb upstream 1.0kb upstream 8189 true Chr05N: 86731698-86739886 Panicum virgatum
Pavir.5NG500100 1.0kb upstream 1.0kb upstream 1000 false Chr05N: 86738887-86739886 Panicum virgatum
Pavir.5NG500100 1.0kb downstream 1.0kb downstream 8189 true Chr05N: 86730698-86738886 Panicum virgatum
Pavir.5NG500100 1.0kb downstream 1.0kb downstream 1000 false Chr05N: 86730698-86731697 Panicum virgatum
Pavir.5NG500100 2.0kb upstream 2.0kb upstream 9189 true Chr05N: 86731698-86740886 Panicum virgatum
Pavir.5NG500100 2.0kb upstream 2.0kb upstream 2000 false Chr05N: 86738887-86740886 Panicum virgatum
Pavir.5NG500100 2.0kb downstream 2.0kb downstream 9189 true Chr05N: 86729698-86738886 Panicum virgatum
Pavir.5NG500100 2.0kb downstream 2.0kb downstream 2000 false Chr05N: 86729698-86731697 Panicum virgatum
Pavir.5NG500100 5.0kb upstream 5.0kb upstream 12189 true Chr05N: 86731698-86743886 Panicum virgatum
Pavir.5NG500100 5.0kb upstream 5.0kb upstream 5000 false Chr05N: 86738887-86743886 Panicum virgatum
Pavir.5NG500100 5.0kb downstream 5.0kb downstream 12189 true Chr05N: 86726698-86738886 Panicum virgatum
Pavir.5NG500100 5.0kb downstream 5.0kb downstream 5000 false Chr05N: 86726698-86731697 Panicum virgatum
Pavir.5NG500100 10.0kb upstream 10.0kb upstream 17189 true Chr05N: 86731698-86748886 Panicum virgatum
Pavir.5NG500100 10.0kb upstream 10.0kb upstream 10000 false Chr05N: 86738887-86748886 Panicum virgatum
Pavir.5NG500100 10.0kb downstream 10.0kb downstream 17189 true Chr05N: 86721698-86738886 Panicum virgatum
Pavir.5NG500100 10.0kb downstream 10.0kb downstream 10000 false Chr05N: 86721698-86731697 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180013 5267 Panicoideae View MSA
124573921 5269 Grass View MSA
122042549 5273 Angiosperm View MSA
121345953 5274 Embryophyte View MSA
123380297 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain