Gene : Thecc1EG024110 T. cacao v1.1
Defline:  (1 of 8) PF01535//PF13812 - PPR repeat (PPR) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1303
Name:  ? Thecc1EG024110 Secondary Identifier:  ? PAC:27424447
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG024110 0.5kb upstream 0.5kb upstream 5330 true scaffold_5: 22292227-22297556 Theobroma cacao
Thecc1EG024110 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 22292227-22292726 Theobroma cacao
Thecc1EG024110 0.5kb downstream 0.5kb downstream 5330 true scaffold_5: 22292727-22298056 Theobroma cacao
Thecc1EG024110 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 22297557-22298056 Theobroma cacao
Thecc1EG024110 1.0kb upstream 1.0kb upstream 5830 true scaffold_5: 22291727-22297556 Theobroma cacao
Thecc1EG024110 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 22291727-22292726 Theobroma cacao
Thecc1EG024110 1.0kb downstream 1.0kb downstream 5830 true scaffold_5: 22292727-22298556 Theobroma cacao
Thecc1EG024110 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 22297557-22298556 Theobroma cacao
Thecc1EG024110 2.0kb upstream 2.0kb upstream 6830 true scaffold_5: 22290727-22297556 Theobroma cacao
Thecc1EG024110 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 22290727-22292726 Theobroma cacao
Thecc1EG024110 2.0kb downstream 2.0kb downstream 6830 true scaffold_5: 22292727-22299556 Theobroma cacao
Thecc1EG024110 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 22297557-22299556 Theobroma cacao
Thecc1EG024110 5.0kb upstream 5.0kb upstream 9830 true scaffold_5: 22287727-22297556 Theobroma cacao
Thecc1EG024110 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 22287727-22292726 Theobroma cacao
Thecc1EG024110 5.0kb downstream 5.0kb downstream 9830 true scaffold_5: 22292727-22302556 Theobroma cacao
Thecc1EG024110 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 22297557-22302556 Theobroma cacao
Thecc1EG024110 10.0kb upstream 10.0kb upstream 14830 true scaffold_5: 22282727-22297556 Theobroma cacao
Thecc1EG024110 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 22282727-22292726 Theobroma cacao
Thecc1EG024110 10.0kb downstream 10.0kb downstream 14830 true scaffold_5: 22292727-22307556 Theobroma cacao
Thecc1EG024110 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 22297557-22307556 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123838872 5264 Brassicales-Malvales View MSA
124337336 5266 SBM View MSA
124238154 5268 Malvidae View MSA
124068490 5270 Rosid View MSA
123736856 5271 Pentapetalae View MSA
122790484 5272 Eudicot View MSA
122044724 5273 Angiosperm View MSA
121351065 5274 Embryophyte View MSA
123381996 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain