Gene : Thecc1EG023924 T. cacao v1.1
Defline:  (1 of 1) PTHR10277//PTHR10277:SF38 - HOMOCITRATE SYNTHASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1249
Name:  ? Thecc1EG023924 Secondary Identifier:  ? PAC:27421065
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao LEU-DEG2-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG023924 0.5kb upstream 0.5kb upstream 8273 true scaffold_5: 20042504-20050776 Theobroma cacao
Thecc1EG023924 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 20050277-20050776 Theobroma cacao
Thecc1EG023924 0.5kb downstream 0.5kb downstream 8273 true scaffold_5: 20042004-20050276 Theobroma cacao
Thecc1EG023924 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 20042004-20042503 Theobroma cacao
Thecc1EG023924 1.0kb upstream 1.0kb upstream 8773 true scaffold_5: 20042504-20051276 Theobroma cacao
Thecc1EG023924 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 20050277-20051276 Theobroma cacao
Thecc1EG023924 1.0kb downstream 1.0kb downstream 8773 true scaffold_5: 20041504-20050276 Theobroma cacao
Thecc1EG023924 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 20041504-20042503 Theobroma cacao
Thecc1EG023924 2.0kb upstream 2.0kb upstream 9773 true scaffold_5: 20042504-20052276 Theobroma cacao
Thecc1EG023924 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 20050277-20052276 Theobroma cacao
Thecc1EG023924 2.0kb downstream 2.0kb downstream 9773 true scaffold_5: 20040504-20050276 Theobroma cacao
Thecc1EG023924 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 20040504-20042503 Theobroma cacao
Thecc1EG023924 5.0kb upstream 5.0kb upstream 12773 true scaffold_5: 20042504-20055276 Theobroma cacao
Thecc1EG023924 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 20050277-20055276 Theobroma cacao
Thecc1EG023924 5.0kb downstream 5.0kb downstream 12773 true scaffold_5: 20037504-20050276 Theobroma cacao
Thecc1EG023924 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 20037504-20042503 Theobroma cacao
Thecc1EG023924 10.0kb upstream 10.0kb upstream 17773 true scaffold_5: 20042504-20060276 Theobroma cacao
Thecc1EG023924 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 20050277-20060276 Theobroma cacao
Thecc1EG023924 10.0kb downstream 10.0kb downstream 17773 true scaffold_5: 20032504-20050276 Theobroma cacao
Thecc1EG023924 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 20032504-20042503 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123826924 5264 Brassicales-Malvales View MSA
124347698 5266 SBM View MSA
124245610 5268 Malvidae View MSA
124074648 5270 Rosid View MSA
123743387 5271 Pentapetalae View MSA
122790168 5272 Eudicot View MSA
122045409 5273 Angiosperm View MSA
121347999 5274 Embryophyte View MSA
123426187 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain