Gene : Pavir.3KG121100 P. virgatum v4.1
Defline:  (1 of 4) K10590 - E3 ubiquitin-protein ligase TRIP12 (TRIP12) Genomic Order:  1133
Name:  ? Pavir.3KG121100 Secondary Identifier:  ? PAC:37595937
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum PWY-7511 Panicum virgatum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.3KG121100 0.5kb upstream 0.5kb upstream 7137 true Chr03K: 10744573-10751709 Panicum virgatum
Pavir.3KG121100 0.5kb upstream 0.5kb upstream 500 false Chr03K: 10744573-10745072 Panicum virgatum
Pavir.3KG121100 0.5kb downstream 0.5kb downstream 7137 true Chr03K: 10745073-10752209 Panicum virgatum
Pavir.3KG121100 0.5kb downstream 0.5kb downstream 500 false Chr03K: 10751710-10752209 Panicum virgatum
Pavir.3KG121100 1.0kb upstream 1.0kb upstream 7637 true Chr03K: 10744073-10751709 Panicum virgatum
Pavir.3KG121100 1.0kb upstream 1.0kb upstream 1000 false Chr03K: 10744073-10745072 Panicum virgatum
Pavir.3KG121100 1.0kb downstream 1.0kb downstream 7637 true Chr03K: 10745073-10752709 Panicum virgatum
Pavir.3KG121100 1.0kb downstream 1.0kb downstream 1000 false Chr03K: 10751710-10752709 Panicum virgatum
Pavir.3KG121100 2.0kb upstream 2.0kb upstream 8637 true Chr03K: 10743073-10751709 Panicum virgatum
Pavir.3KG121100 2.0kb upstream 2.0kb upstream 2000 false Chr03K: 10743073-10745072 Panicum virgatum
Pavir.3KG121100 2.0kb downstream 2.0kb downstream 8637 true Chr03K: 10745073-10753709 Panicum virgatum
Pavir.3KG121100 2.0kb downstream 2.0kb downstream 2000 false Chr03K: 10751710-10753709 Panicum virgatum
Pavir.3KG121100 5.0kb upstream 5.0kb upstream 11637 true Chr03K: 10740073-10751709 Panicum virgatum
Pavir.3KG121100 5.0kb upstream 5.0kb upstream 5000 false Chr03K: 10740073-10745072 Panicum virgatum
Pavir.3KG121100 5.0kb downstream 5.0kb downstream 11637 true Chr03K: 10745073-10756709 Panicum virgatum
Pavir.3KG121100 5.0kb downstream 5.0kb downstream 5000 false Chr03K: 10751710-10756709 Panicum virgatum
Pavir.3KG121100 10.0kb upstream 10.0kb upstream 16637 true Chr03K: 10735073-10751709 Panicum virgatum
Pavir.3KG121100 10.0kb upstream 10.0kb upstream 10000 false Chr03K: 10735073-10745072 Panicum virgatum
Pavir.3KG121100 10.0kb downstream 10.0kb downstream 16637 true Chr03K: 10745073-10761709 Panicum virgatum
Pavir.3KG121100 10.0kb downstream 10.0kb downstream 10000 false Chr03K: 10751710-10761709 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188896 5267 Panicoideae View MSA
124574381 5269 Grass View MSA
122044351 5273 Angiosperm View MSA
121310283 5274 Embryophyte View MSA
123428406 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain