Gene : Thecc1EG024344 T. cacao v1.1
Defline:  (1 of 4) 2.1.1.260 - rRNA small subunit pseudouridine methyltransferase Nep1 Genomic Order:  1402
Name:  ? Thecc1EG024344 Secondary Identifier:  ? PAC:27422093
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG024344 0.5kb upstream 0.5kb upstream 34285 true scaffold_5: 24741046-24775330 Theobroma cacao
Thecc1EG024344 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 24741046-24741545 Theobroma cacao
Thecc1EG024344 0.5kb downstream 0.5kb downstream 34285 true scaffold_5: 24741546-24775830 Theobroma cacao
Thecc1EG024344 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 24775331-24775830 Theobroma cacao
Thecc1EG024344 1.0kb upstream 1.0kb upstream 34785 true scaffold_5: 24740546-24775330 Theobroma cacao
Thecc1EG024344 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 24740546-24741545 Theobroma cacao
Thecc1EG024344 1.0kb downstream 1.0kb downstream 34785 true scaffold_5: 24741546-24776330 Theobroma cacao
Thecc1EG024344 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 24775331-24776330 Theobroma cacao
Thecc1EG024344 2.0kb upstream 2.0kb upstream 35785 true scaffold_5: 24739546-24775330 Theobroma cacao
Thecc1EG024344 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 24739546-24741545 Theobroma cacao
Thecc1EG024344 2.0kb downstream 2.0kb downstream 35785 true scaffold_5: 24741546-24777330 Theobroma cacao
Thecc1EG024344 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 24775331-24777330 Theobroma cacao
Thecc1EG024344 5.0kb upstream 5.0kb upstream 38785 true scaffold_5: 24736546-24775330 Theobroma cacao
Thecc1EG024344 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 24736546-24741545 Theobroma cacao
Thecc1EG024344 5.0kb downstream 5.0kb downstream 38785 true scaffold_5: 24741546-24780330 Theobroma cacao
Thecc1EG024344 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 24775331-24780330 Theobroma cacao
Thecc1EG024344 10.0kb upstream 10.0kb upstream 43785 true scaffold_5: 24731546-24775330 Theobroma cacao
Thecc1EG024344 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 24731546-24741545 Theobroma cacao
Thecc1EG024344 10.0kb downstream 10.0kb downstream 43785 true scaffold_5: 24741546-24785330 Theobroma cacao
Thecc1EG024344 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 24775331-24785330 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123834900 5264 Brassicales-Malvales View MSA
124341453 5266 SBM View MSA
124247817 5268 Malvidae View MSA
124066897 5270 Rosid View MSA
123749345 5271 Pentapetalae View MSA
122789424 5272 Eudicot View MSA
122046063 5273 Angiosperm View MSA
121345370 5274 Embryophyte View MSA
123425050 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain