Gene : Thecc1EG024949 T. cacao v1.1
Defline:  (1 of 3) PTHR10315//PTHR10315:SF34 - SEVEN IN ABSENTIA HOMOLOG // E3 UBIQUITIN-PROTEIN LIGASE SINAT3-RELATED Genomic Order:  1764
Name:  ? Thecc1EG024949 Secondary Identifier:  ? PAC:27420863
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-7511 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG024949 0.5kb upstream 0.5kb upstream 4955 true scaffold_5: 29729386-29734340 Theobroma cacao
Thecc1EG024949 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 29729386-29729885 Theobroma cacao
Thecc1EG024949 0.5kb downstream 0.5kb downstream 4955 true scaffold_5: 29729886-29734840 Theobroma cacao
Thecc1EG024949 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 29734341-29734840 Theobroma cacao
Thecc1EG024949 1.0kb upstream 1.0kb upstream 5455 true scaffold_5: 29728886-29734340 Theobroma cacao
Thecc1EG024949 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 29728886-29729885 Theobroma cacao
Thecc1EG024949 1.0kb downstream 1.0kb downstream 5455 true scaffold_5: 29729886-29735340 Theobroma cacao
Thecc1EG024949 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 29734341-29735340 Theobroma cacao
Thecc1EG024949 2.0kb upstream 2.0kb upstream 6455 true scaffold_5: 29727886-29734340 Theobroma cacao
Thecc1EG024949 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 29727886-29729885 Theobroma cacao
Thecc1EG024949 2.0kb downstream 2.0kb downstream 6455 true scaffold_5: 29729886-29736340 Theobroma cacao
Thecc1EG024949 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 29734341-29736340 Theobroma cacao
Thecc1EG024949 5.0kb upstream 5.0kb upstream 9455 true scaffold_5: 29724886-29734340 Theobroma cacao
Thecc1EG024949 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 29724886-29729885 Theobroma cacao
Thecc1EG024949 5.0kb downstream 5.0kb downstream 9455 true scaffold_5: 29729886-29739340 Theobroma cacao
Thecc1EG024949 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 29734341-29739340 Theobroma cacao
Thecc1EG024949 10.0kb upstream 10.0kb upstream 14455 true scaffold_5: 29719886-29734340 Theobroma cacao
Thecc1EG024949 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 29719886-29729885 Theobroma cacao
Thecc1EG024949 10.0kb downstream 10.0kb downstream 14455 true scaffold_5: 29729886-29744340 Theobroma cacao
Thecc1EG024949 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 29734341-29744340 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123840552 5264 Brassicales-Malvales View MSA
124344674 5266 SBM View MSA
124246222 5268 Malvidae View MSA
124072834 5270 Rosid View MSA
123746623 5271 Pentapetalae View MSA
122796827 5272 Eudicot View MSA
122050638 5273 Angiosperm View MSA
121350928 5274 Embryophyte View MSA
123381939 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain