Gene : Pavir.5KG180000 P. virgatum v4.1
Defline:  (1 of 2) PTHR10277//PTHR10277:SF41 - HOMOCITRATE SYNTHASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1660
Name:  ? Pavir.5KG180000 Secondary Identifier:  ? PAC:37637134
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum LEU-DEG2-PWY Panicum virgatum pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.5KG180000 0.5kb upstream 0.5kb upstream 5400 true Chr05K: 22905487-22910886 Panicum virgatum
Pavir.5KG180000 0.5kb upstream 0.5kb upstream 500 false Chr05K: 22910387-22910886 Panicum virgatum
Pavir.5KG180000 0.5kb downstream 0.5kb downstream 5400 true Chr05K: 22904987-22910386 Panicum virgatum
Pavir.5KG180000 0.5kb downstream 0.5kb downstream 500 false Chr05K: 22904987-22905486 Panicum virgatum
Pavir.5KG180000 1.0kb upstream 1.0kb upstream 5900 true Chr05K: 22905487-22911386 Panicum virgatum
Pavir.5KG180000 1.0kb upstream 1.0kb upstream 1000 false Chr05K: 22910387-22911386 Panicum virgatum
Pavir.5KG180000 1.0kb downstream 1.0kb downstream 5900 true Chr05K: 22904487-22910386 Panicum virgatum
Pavir.5KG180000 1.0kb downstream 1.0kb downstream 1000 false Chr05K: 22904487-22905486 Panicum virgatum
Pavir.5KG180000 2.0kb upstream 2.0kb upstream 6900 true Chr05K: 22905487-22912386 Panicum virgatum
Pavir.5KG180000 2.0kb upstream 2.0kb upstream 2000 false Chr05K: 22910387-22912386 Panicum virgatum
Pavir.5KG180000 2.0kb downstream 2.0kb downstream 6900 true Chr05K: 22903487-22910386 Panicum virgatum
Pavir.5KG180000 2.0kb downstream 2.0kb downstream 2000 false Chr05K: 22903487-22905486 Panicum virgatum
Pavir.5KG180000 5.0kb upstream 5.0kb upstream 9900 true Chr05K: 22905487-22915386 Panicum virgatum
Pavir.5KG180000 5.0kb upstream 5.0kb upstream 5000 false Chr05K: 22910387-22915386 Panicum virgatum
Pavir.5KG180000 5.0kb downstream 5.0kb downstream 9900 true Chr05K: 22900487-22910386 Panicum virgatum
Pavir.5KG180000 5.0kb downstream 5.0kb downstream 5000 false Chr05K: 22900487-22905486 Panicum virgatum
Pavir.5KG180000 10.0kb upstream 10.0kb upstream 14900 true Chr05K: 22905487-22920386 Panicum virgatum
Pavir.5KG180000 10.0kb upstream 10.0kb upstream 10000 false Chr05K: 22910387-22920386 Panicum virgatum
Pavir.5KG180000 10.0kb downstream 10.0kb downstream 14900 true Chr05K: 22895487-22910386 Panicum virgatum
Pavir.5KG180000 10.0kb downstream 10.0kb downstream 10000 false Chr05K: 22895487-22905486 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195839 5267 Panicoideae View MSA
124575299 5269 Grass View MSA
122045409 5273 Angiosperm View MSA
121347999 5274 Embryophyte View MSA
123426187 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain