Gene : Thecc1EG025072 T. cacao v1.1

Defline:  (1 of 82) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  1861
Name:  ? Thecc1EG025072 Secondary Identifier:  ? PAC:27420987

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG025072 0.5kb upstream 0.5kb upstream 3158 true scaffold_5: 30480340-30483497 Theobroma cacao
Thecc1EG025072 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 30480340-30480839 Theobroma cacao
Thecc1EG025072 0.5kb downstream 0.5kb downstream 3158 true scaffold_5: 30480840-30483997 Theobroma cacao
Thecc1EG025072 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 30483498-30483997 Theobroma cacao
Thecc1EG025072 1.0kb upstream 1.0kb upstream 3658 true scaffold_5: 30479840-30483497 Theobroma cacao
Thecc1EG025072 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 30479840-30480839 Theobroma cacao
Thecc1EG025072 1.0kb downstream 1.0kb downstream 3658 true scaffold_5: 30480840-30484497 Theobroma cacao
Thecc1EG025072 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 30483498-30484497 Theobroma cacao
Thecc1EG025072 2.0kb upstream 2.0kb upstream 4658 true scaffold_5: 30478840-30483497 Theobroma cacao
Thecc1EG025072 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 30478840-30480839 Theobroma cacao
Thecc1EG025072 2.0kb downstream 2.0kb downstream 4658 true scaffold_5: 30480840-30485497 Theobroma cacao
Thecc1EG025072 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 30483498-30485497 Theobroma cacao
Thecc1EG025072 5.0kb upstream 5.0kb upstream 7658 true scaffold_5: 30475840-30483497 Theobroma cacao
Thecc1EG025072 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 30475840-30480839 Theobroma cacao
Thecc1EG025072 5.0kb downstream 5.0kb downstream 7658 true scaffold_5: 30480840-30488497 Theobroma cacao
Thecc1EG025072 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 30483498-30488497 Theobroma cacao
Thecc1EG025072 10.0kb upstream 10.0kb upstream 12658 true scaffold_5: 30470840-30483497 Theobroma cacao
Thecc1EG025072 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 30470840-30480839 Theobroma cacao
Thecc1EG025072 10.0kb downstream 10.0kb downstream 12658 true scaffold_5: 30480840-30493497 Theobroma cacao
Thecc1EG025072 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 30483498-30493497 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123827807 5264 Brassicales-Malvales View MSA
124351259 5266 SBM View MSA
124252297 5268 Malvidae View MSA
124072628 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain