Gene : Thecc1EG025025 T. cacao v1.1
Defline:  (1 of 1) KOG0107//KOG0114//KOG0126 - Alternative splicing factor SRp20/9G8 (RRM superfamily) // Predicted RNA-binding protein (RRM superfamily) // Predicted RNA-binding protein (RRM superfamily) Genomic Order:  1818
Name:  ? Thecc1EG025025 Secondary Identifier:  ? PAC:27420918
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG025025 0.5kb upstream 0.5kb upstream 7071 true scaffold_5: 30219746-30226816 Theobroma cacao
Thecc1EG025025 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 30226317-30226816 Theobroma cacao
Thecc1EG025025 0.5kb downstream 0.5kb downstream 7071 true scaffold_5: 30219246-30226316 Theobroma cacao
Thecc1EG025025 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 30219246-30219745 Theobroma cacao
Thecc1EG025025 1.0kb upstream 1.0kb upstream 7571 true scaffold_5: 30219746-30227316 Theobroma cacao
Thecc1EG025025 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 30226317-30227316 Theobroma cacao
Thecc1EG025025 1.0kb downstream 1.0kb downstream 7571 true scaffold_5: 30218746-30226316 Theobroma cacao
Thecc1EG025025 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 30218746-30219745 Theobroma cacao
Thecc1EG025025 2.0kb upstream 2.0kb upstream 8571 true scaffold_5: 30219746-30228316 Theobroma cacao
Thecc1EG025025 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 30226317-30228316 Theobroma cacao
Thecc1EG025025 2.0kb downstream 2.0kb downstream 8571 true scaffold_5: 30217746-30226316 Theobroma cacao
Thecc1EG025025 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 30217746-30219745 Theobroma cacao
Thecc1EG025025 5.0kb upstream 5.0kb upstream 11571 true scaffold_5: 30219746-30231316 Theobroma cacao
Thecc1EG025025 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 30226317-30231316 Theobroma cacao
Thecc1EG025025 5.0kb downstream 5.0kb downstream 11571 true scaffold_5: 30214746-30226316 Theobroma cacao
Thecc1EG025025 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 30214746-30219745 Theobroma cacao
Thecc1EG025025 10.0kb upstream 10.0kb upstream 16571 true scaffold_5: 30219746-30236316 Theobroma cacao
Thecc1EG025025 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 30226317-30236316 Theobroma cacao
Thecc1EG025025 10.0kb downstream 10.0kb downstream 16571 true scaffold_5: 30209746-30226316 Theobroma cacao
Thecc1EG025025 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 30209746-30219745 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123820649 5264 Brassicales-Malvales Singleton cluster - no MSA
124348389 5266 SBM View MSA
124246230 5268 Malvidae View MSA
124061952 5270 Rosid View MSA
123751655 5271 Pentapetalae View MSA
122788413 5272 Eudicot View MSA
122045186 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349478 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain