Gene : Thecc1EG025008 T. cacao v1.1
Defline:  (1 of 1) PTHR14969:SF3 - DIHYDROSPHINGOSINE 1-PHOSPHATE PHOSPHATASE LCB3-RELATED Genomic Order:  1805
Name:  ? Thecc1EG025008 Secondary Identifier:  ? PAC:27421285
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao TRIGLSYN-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG025008 0.5kb upstream 0.5kb upstream 9570 true scaffold_5: 30043568-30053137 Theobroma cacao
Thecc1EG025008 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 30052638-30053137 Theobroma cacao
Thecc1EG025008 0.5kb downstream 0.5kb downstream 9570 true scaffold_5: 30043068-30052637 Theobroma cacao
Thecc1EG025008 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 30043068-30043567 Theobroma cacao
Thecc1EG025008 1.0kb upstream 1.0kb upstream 10070 true scaffold_5: 30043568-30053637 Theobroma cacao
Thecc1EG025008 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 30052638-30053637 Theobroma cacao
Thecc1EG025008 1.0kb downstream 1.0kb downstream 10070 true scaffold_5: 30042568-30052637 Theobroma cacao
Thecc1EG025008 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 30042568-30043567 Theobroma cacao
Thecc1EG025008 2.0kb upstream 2.0kb upstream 11070 true scaffold_5: 30043568-30054637 Theobroma cacao
Thecc1EG025008 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 30052638-30054637 Theobroma cacao
Thecc1EG025008 2.0kb downstream 2.0kb downstream 11070 true scaffold_5: 30041568-30052637 Theobroma cacao
Thecc1EG025008 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 30041568-30043567 Theobroma cacao
Thecc1EG025008 5.0kb upstream 5.0kb upstream 14070 true scaffold_5: 30043568-30057637 Theobroma cacao
Thecc1EG025008 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 30052638-30057637 Theobroma cacao
Thecc1EG025008 5.0kb downstream 5.0kb downstream 14070 true scaffold_5: 30038568-30052637 Theobroma cacao
Thecc1EG025008 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 30038568-30043567 Theobroma cacao
Thecc1EG025008 10.0kb upstream 10.0kb upstream 19070 true scaffold_5: 30043568-30062637 Theobroma cacao
Thecc1EG025008 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 30052638-30062637 Theobroma cacao
Thecc1EG025008 10.0kb downstream 10.0kb downstream 19070 true scaffold_5: 30033568-30052637 Theobroma cacao
Thecc1EG025008 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 30033568-30043567 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123832821 5264 Brassicales-Malvales View MSA
124342995 5266 SBM View MSA
124241602 5268 Malvidae View MSA
124061101 5270 Rosid View MSA
123739708 5271 Pentapetalae View MSA
122787223 5272 Eudicot View MSA
122041787 5273 Angiosperm View MSA
121351488 5274 Embryophyte View MSA
123382186 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain