Gene : Pavir.5KG548400 P. virgatum v4.1
Defline:  (1 of 4) K17913 - carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase (CCD8) Genomic Order:  4978
Name:  ? Pavir.5KG548400 Secondary Identifier:  ? PAC:37634594
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum PWY-7101 Panicum virgatum pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.5KG548400 0.5kb upstream 0.5kb upstream 2935 true Chr05K: 94743720-94746654 Panicum virgatum
Pavir.5KG548400 0.5kb upstream 0.5kb upstream 500 false Chr05K: 94746155-94746654 Panicum virgatum
Pavir.5KG548400 0.5kb downstream 0.5kb downstream 2935 true Chr05K: 94743220-94746154 Panicum virgatum
Pavir.5KG548400 0.5kb downstream 0.5kb downstream 500 false Chr05K: 94743220-94743719 Panicum virgatum
Pavir.5KG548400 1.0kb upstream 1.0kb upstream 3435 true Chr05K: 94743720-94747154 Panicum virgatum
Pavir.5KG548400 1.0kb upstream 1.0kb upstream 1000 false Chr05K: 94746155-94747154 Panicum virgatum
Pavir.5KG548400 1.0kb downstream 1.0kb downstream 3435 true Chr05K: 94742720-94746154 Panicum virgatum
Pavir.5KG548400 1.0kb downstream 1.0kb downstream 1000 false Chr05K: 94742720-94743719 Panicum virgatum
Pavir.5KG548400 2.0kb upstream 2.0kb upstream 4435 true Chr05K: 94743720-94748154 Panicum virgatum
Pavir.5KG548400 2.0kb upstream 2.0kb upstream 2000 false Chr05K: 94746155-94748154 Panicum virgatum
Pavir.5KG548400 2.0kb downstream 2.0kb downstream 4435 true Chr05K: 94741720-94746154 Panicum virgatum
Pavir.5KG548400 2.0kb downstream 2.0kb downstream 2000 false Chr05K: 94741720-94743719 Panicum virgatum
Pavir.5KG548400 5.0kb upstream 5.0kb upstream 7435 true Chr05K: 94743720-94751154 Panicum virgatum
Pavir.5KG548400 5.0kb upstream 5.0kb upstream 5000 false Chr05K: 94746155-94751154 Panicum virgatum
Pavir.5KG548400 5.0kb downstream 5.0kb downstream 7435 true Chr05K: 94738720-94746154 Panicum virgatum
Pavir.5KG548400 5.0kb downstream 5.0kb downstream 5000 false Chr05K: 94738720-94743719 Panicum virgatum
Pavir.5KG548400 10.0kb upstream 10.0kb upstream 12435 true Chr05K: 94743720-94756154 Panicum virgatum
Pavir.5KG548400 10.0kb upstream 10.0kb upstream 10000 false Chr05K: 94746155-94756154 Panicum virgatum
Pavir.5KG548400 10.0kb downstream 10.0kb downstream 12435 true Chr05K: 94733720-94746154 Panicum virgatum
Pavir.5KG548400 10.0kb downstream 10.0kb downstream 10000 false Chr05K: 94733720-94743719 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122117608 5267 Panicoideae View MSA
124587364 5269 Grass View MSA
122048984 5273 Angiosperm View MSA
123428919 5275 Viridiplantae View MSA
121344649 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain