Gene : Pavir.5KG677500 P. virgatum v4.1
Defline:  (1 of 2) KOG1048 - Neural adherens junction protein Plakophilin and related Armadillo repeat proteins Genomic Order:  6165
Name:  ? Pavir.5KG677500 Secondary Identifier:  ? PAC:37635610
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum PWY-7511 Panicum virgatum pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.5KG677500 0.5kb upstream 0.5kb upstream 4338 true Chr05K: 106435917-106440254 Panicum virgatum
Pavir.5KG677500 0.5kb upstream 0.5kb upstream 500 false Chr05K: 106435917-106436416 Panicum virgatum
Pavir.5KG677500 0.5kb downstream 0.5kb downstream 4338 true Chr05K: 106436417-106440754 Panicum virgatum
Pavir.5KG677500 0.5kb downstream 0.5kb downstream 500 false Chr05K: 106440255-106440754 Panicum virgatum
Pavir.5KG677500 1.0kb upstream 1.0kb upstream 4838 true Chr05K: 106435417-106440254 Panicum virgatum
Pavir.5KG677500 1.0kb upstream 1.0kb upstream 1000 false Chr05K: 106435417-106436416 Panicum virgatum
Pavir.5KG677500 1.0kb downstream 1.0kb downstream 4838 true Chr05K: 106436417-106441254 Panicum virgatum
Pavir.5KG677500 1.0kb downstream 1.0kb downstream 1000 false Chr05K: 106440255-106441254 Panicum virgatum
Pavir.5KG677500 2.0kb upstream 2.0kb upstream 5838 true Chr05K: 106434417-106440254 Panicum virgatum
Pavir.5KG677500 2.0kb upstream 2.0kb upstream 2000 false Chr05K: 106434417-106436416 Panicum virgatum
Pavir.5KG677500 2.0kb downstream 2.0kb downstream 5838 true Chr05K: 106436417-106442254 Panicum virgatum
Pavir.5KG677500 2.0kb downstream 2.0kb downstream 2000 false Chr05K: 106440255-106442254 Panicum virgatum
Pavir.5KG677500 5.0kb upstream 5.0kb upstream 8838 true Chr05K: 106431417-106440254 Panicum virgatum
Pavir.5KG677500 5.0kb upstream 5.0kb upstream 5000 false Chr05K: 106431417-106436416 Panicum virgatum
Pavir.5KG677500 5.0kb downstream 5.0kb downstream 8838 true Chr05K: 106436417-106445254 Panicum virgatum
Pavir.5KG677500 5.0kb downstream 5.0kb downstream 5000 false Chr05K: 106440255-106445254 Panicum virgatum
Pavir.5KG677500 10.0kb upstream 10.0kb upstream 13838 true Chr05K: 106426417-106440254 Panicum virgatum
Pavir.5KG677500 10.0kb upstream 10.0kb upstream 10000 false Chr05K: 106426417-106436416 Panicum virgatum
Pavir.5KG677500 10.0kb downstream 10.0kb downstream 13838 true Chr05K: 106436417-106450254 Panicum virgatum
Pavir.5KG677500 10.0kb downstream 10.0kb downstream 10000 false Chr05K: 106440255-106450254 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176885 5267 Panicoideae View MSA
124572302 5269 Grass View MSA
122048814 5273 Angiosperm View MSA
121345933 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain