Gene : Pavir.J041400 P. virgatum v4.1
Defline:  (1 of 2) PTHR11177:SF92 - CHITINASE DOMAIN-CONTAINING PROTEIN 1 Genomic Order:  1
Name:  ? Pavir.J041400 Secondary Identifier:  ? PAC:37601973
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.J041400 0.5kb upstream 0.5kb upstream 4439 true scaffold_1127: 16740-21178 Panicum virgatum
Pavir.J041400 0.5kb upstream 0.5kb upstream 500 false scaffold_1127: 16740-17239 Panicum virgatum
Pavir.J041400 0.5kb downstream 0.5kb downstream 4439 true scaffold_1127: 17240-21678 Panicum virgatum
Pavir.J041400 0.5kb downstream 0.5kb downstream 500 false scaffold_1127: 21179-21678 Panicum virgatum
Pavir.J041400 1.0kb upstream 1.0kb upstream 4939 true scaffold_1127: 16240-21178 Panicum virgatum
Pavir.J041400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1127: 16240-17239 Panicum virgatum
Pavir.J041400 1.0kb downstream 1.0kb downstream 4939 true scaffold_1127: 17240-22178 Panicum virgatum
Pavir.J041400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1127: 21179-22178 Panicum virgatum
Pavir.J041400 2.0kb upstream 2.0kb upstream 5939 true scaffold_1127: 15240-21178 Panicum virgatum
Pavir.J041400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1127: 15240-17239 Panicum virgatum
Pavir.J041400 2.0kb downstream 2.0kb downstream 5939 true scaffold_1127: 17240-23178 Panicum virgatum
Pavir.J041400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1127: 21179-23178 Panicum virgatum
Pavir.J041400 5.0kb upstream 5.0kb upstream 8939 true scaffold_1127: 12240-21178 Panicum virgatum
Pavir.J041400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1127: 12240-17239 Panicum virgatum
Pavir.J041400 5.0kb downstream 5.0kb downstream 8845 true scaffold_1127: 17240-26084 Panicum virgatum
Pavir.J041400 5.0kb downstream 5.0kb downstream 4906 false scaffold_1127: 21179-26084 Panicum virgatum
Pavir.J041400 10.0kb upstream 10.0kb upstream 13939 true scaffold_1127: 7240-21178 Panicum virgatum
Pavir.J041400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1127: 7240-17239 Panicum virgatum
Pavir.J041400 10.0kb downstream 10.0kb downstream 8845 true scaffold_1127: 17240-26084 Panicum virgatum
Pavir.J041400 10.0kb downstream 10.0kb downstream 4906 false scaffold_1127: 21179-26084 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122086174 5267 Panicoideae Singleton cluster - no MSA
124384094 5269 Grass Singleton cluster - no MSA
122044286 5273 Angiosperm View MSA
121344422 5274 Embryophyte View MSA
123425945 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain