Gene : Thecc1EG025207 T. cacao v1.1
Defline:  (1 of 1) PTHR11476:SF7 - HISTIDYL-TRNA SYNTHETASE, ISOFORM D Genomic Order:  1964
Name:  ? Thecc1EG025207 Secondary Identifier:  ? PAC:27425181
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao TRNA-CHARGING-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG025207 0.5kb upstream 0.5kb upstream 6734 true scaffold_5: 31245809-31252542 Theobroma cacao
Thecc1EG025207 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 31245809-31246308 Theobroma cacao
Thecc1EG025207 0.5kb downstream 0.5kb downstream 6734 true scaffold_5: 31246309-31253042 Theobroma cacao
Thecc1EG025207 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 31252543-31253042 Theobroma cacao
Thecc1EG025207 1.0kb upstream 1.0kb upstream 7234 true scaffold_5: 31245309-31252542 Theobroma cacao
Thecc1EG025207 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 31245309-31246308 Theobroma cacao
Thecc1EG025207 1.0kb downstream 1.0kb downstream 7234 true scaffold_5: 31246309-31253542 Theobroma cacao
Thecc1EG025207 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 31252543-31253542 Theobroma cacao
Thecc1EG025207 2.0kb upstream 2.0kb upstream 8234 true scaffold_5: 31244309-31252542 Theobroma cacao
Thecc1EG025207 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 31244309-31246308 Theobroma cacao
Thecc1EG025207 2.0kb downstream 2.0kb downstream 8234 true scaffold_5: 31246309-31254542 Theobroma cacao
Thecc1EG025207 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 31252543-31254542 Theobroma cacao
Thecc1EG025207 5.0kb upstream 5.0kb upstream 11234 true scaffold_5: 31241309-31252542 Theobroma cacao
Thecc1EG025207 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 31241309-31246308 Theobroma cacao
Thecc1EG025207 5.0kb downstream 5.0kb downstream 11234 true scaffold_5: 31246309-31257542 Theobroma cacao
Thecc1EG025207 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 31252543-31257542 Theobroma cacao
Thecc1EG025207 10.0kb upstream 10.0kb upstream 16234 true scaffold_5: 31236309-31252542 Theobroma cacao
Thecc1EG025207 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 31236309-31246308 Theobroma cacao
Thecc1EG025207 10.0kb downstream 10.0kb downstream 16234 true scaffold_5: 31246309-31262542 Theobroma cacao
Thecc1EG025207 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 31252543-31262542 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123830698 5264 Brassicales-Malvales View MSA
124337694 5266 SBM View MSA
124242303 5268 Malvidae View MSA
124074510 5270 Rosid View MSA
123750553 5271 Pentapetalae View MSA
122793881 5272 Eudicot View MSA
122047537 5273 Angiosperm View MSA
121349127 5274 Embryophyte View MSA
123427860 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain