Gene : Thecc1EG025137 T. cacao v1.1
Defline:  (1 of 467) PF13041 - PPR repeat family (PPR_2) Genomic Order:  1907
Name:  ? Thecc1EG025137 Secondary Identifier:  ? PAC:27421403
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG025137 0.5kb upstream 0.5kb upstream 4295 true scaffold_5: 30899306-30903600 Theobroma cacao
Thecc1EG025137 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 30899306-30899805 Theobroma cacao
Thecc1EG025137 0.5kb downstream 0.5kb downstream 4295 true scaffold_5: 30899806-30904100 Theobroma cacao
Thecc1EG025137 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 30903601-30904100 Theobroma cacao
Thecc1EG025137 1.0kb upstream 1.0kb upstream 4795 true scaffold_5: 30898806-30903600 Theobroma cacao
Thecc1EG025137 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 30898806-30899805 Theobroma cacao
Thecc1EG025137 1.0kb downstream 1.0kb downstream 4795 true scaffold_5: 30899806-30904600 Theobroma cacao
Thecc1EG025137 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 30903601-30904600 Theobroma cacao
Thecc1EG025137 2.0kb upstream 2.0kb upstream 5795 true scaffold_5: 30897806-30903600 Theobroma cacao
Thecc1EG025137 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 30897806-30899805 Theobroma cacao
Thecc1EG025137 2.0kb downstream 2.0kb downstream 5795 true scaffold_5: 30899806-30905600 Theobroma cacao
Thecc1EG025137 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 30903601-30905600 Theobroma cacao
Thecc1EG025137 5.0kb upstream 5.0kb upstream 8795 true scaffold_5: 30894806-30903600 Theobroma cacao
Thecc1EG025137 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 30894806-30899805 Theobroma cacao
Thecc1EG025137 5.0kb downstream 5.0kb downstream 8795 true scaffold_5: 30899806-30908600 Theobroma cacao
Thecc1EG025137 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 30903601-30908600 Theobroma cacao
Thecc1EG025137 10.0kb upstream 10.0kb upstream 13795 true scaffold_5: 30889806-30903600 Theobroma cacao
Thecc1EG025137 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 30889806-30899805 Theobroma cacao
Thecc1EG025137 10.0kb downstream 10.0kb downstream 13795 true scaffold_5: 30899806-30913600 Theobroma cacao
Thecc1EG025137 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 30903601-30913600 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123841436 5264 Brassicales-Malvales View MSA
124350672 5266 SBM View MSA
124254642 5268 Malvidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain