Gene : Thecc1EG025459 T. cacao v1.1
Defline:  (1 of 1) PTHR24096:SF169 - 4-COUMARATE--COA LIGASE 3 Genomic Order:  2137
Name:  ? Thecc1EG025459 Secondary Identifier:  ? PAC:27423553
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-1121 Theobroma cacao pathologic  
Tcacao PWY1F-FLAVSYN Theobroma cacao pathologic  
Tcacao PWY-361 Theobroma cacao pathologic  
Tcacao PWY-6435 Theobroma cacao pathologic  
Tcacao PWY-6673 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG025459 0.5kb upstream 0.5kb upstream 6678 true scaffold_5: 32876671-32883348 Theobroma cacao
Thecc1EG025459 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 32882849-32883348 Theobroma cacao
Thecc1EG025459 0.5kb downstream 0.5kb downstream 6678 true scaffold_5: 32876171-32882848 Theobroma cacao
Thecc1EG025459 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 32876171-32876670 Theobroma cacao
Thecc1EG025459 1.0kb upstream 1.0kb upstream 7178 true scaffold_5: 32876671-32883848 Theobroma cacao
Thecc1EG025459 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 32882849-32883848 Theobroma cacao
Thecc1EG025459 1.0kb downstream 1.0kb downstream 7178 true scaffold_5: 32875671-32882848 Theobroma cacao
Thecc1EG025459 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 32875671-32876670 Theobroma cacao
Thecc1EG025459 2.0kb upstream 2.0kb upstream 8178 true scaffold_5: 32876671-32884848 Theobroma cacao
Thecc1EG025459 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 32882849-32884848 Theobroma cacao
Thecc1EG025459 2.0kb downstream 2.0kb downstream 8178 true scaffold_5: 32874671-32882848 Theobroma cacao
Thecc1EG025459 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 32874671-32876670 Theobroma cacao
Thecc1EG025459 5.0kb upstream 5.0kb upstream 11178 true scaffold_5: 32876671-32887848 Theobroma cacao
Thecc1EG025459 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 32882849-32887848 Theobroma cacao
Thecc1EG025459 5.0kb downstream 5.0kb downstream 11178 true scaffold_5: 32871671-32882848 Theobroma cacao
Thecc1EG025459 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 32871671-32876670 Theobroma cacao
Thecc1EG025459 10.0kb upstream 10.0kb upstream 16178 true scaffold_5: 32876671-32892848 Theobroma cacao
Thecc1EG025459 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 32882849-32892848 Theobroma cacao
Thecc1EG025459 10.0kb downstream 10.0kb downstream 16178 true scaffold_5: 32866671-32882848 Theobroma cacao
Thecc1EG025459 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 32866671-32876670 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123829315 5264 Brassicales-Malvales View MSA
124337093 5266 SBM View MSA
124239638 5268 Malvidae View MSA
124063529 5270 Rosid View MSA
123738118 5271 Pentapetalae View MSA
122792374 5272 Eudicot View MSA
122048251 5273 Angiosperm View MSA
121345883 5274 Embryophyte View MSA
123380283 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain