Gene : Pavir.2NG235700 P. virgatum v4.1
Defline:  (1 of 4) PTHR11452//PTHR11452:SF31 - ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE // SUBFAMILY NOT NAMED Genomic Order:  2090
Name:  ? Pavir.2NG235700 Secondary Identifier:  ? PAC:37587051
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum PWY0-1301 Panicum virgatum pathologic  
Pvirgatum PWY-6527 Panicum virgatum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.2NG235700 0.5kb upstream 0.5kb upstream 2303 true Chr02N: 44240539-44242841 Panicum virgatum
Pavir.2NG235700 0.5kb upstream 0.5kb upstream 500 false Chr02N: 44242342-44242841 Panicum virgatum
Pavir.2NG235700 0.5kb downstream 0.5kb downstream 2303 true Chr02N: 44240039-44242341 Panicum virgatum
Pavir.2NG235700 0.5kb downstream 0.5kb downstream 500 false Chr02N: 44240039-44240538 Panicum virgatum
Pavir.2NG235700 1.0kb upstream 1.0kb upstream 2803 true Chr02N: 44240539-44243341 Panicum virgatum
Pavir.2NG235700 1.0kb upstream 1.0kb upstream 1000 false Chr02N: 44242342-44243341 Panicum virgatum
Pavir.2NG235700 1.0kb downstream 1.0kb downstream 2803 true Chr02N: 44239539-44242341 Panicum virgatum
Pavir.2NG235700 1.0kb downstream 1.0kb downstream 1000 false Chr02N: 44239539-44240538 Panicum virgatum
Pavir.2NG235700 2.0kb upstream 2.0kb upstream 3803 true Chr02N: 44240539-44244341 Panicum virgatum
Pavir.2NG235700 2.0kb upstream 2.0kb upstream 2000 false Chr02N: 44242342-44244341 Panicum virgatum
Pavir.2NG235700 2.0kb downstream 2.0kb downstream 3803 true Chr02N: 44238539-44242341 Panicum virgatum
Pavir.2NG235700 2.0kb downstream 2.0kb downstream 2000 false Chr02N: 44238539-44240538 Panicum virgatum
Pavir.2NG235700 5.0kb upstream 5.0kb upstream 6803 true Chr02N: 44240539-44247341 Panicum virgatum
Pavir.2NG235700 5.0kb upstream 5.0kb upstream 5000 false Chr02N: 44242342-44247341 Panicum virgatum
Pavir.2NG235700 5.0kb downstream 5.0kb downstream 6803 true Chr02N: 44235539-44242341 Panicum virgatum
Pavir.2NG235700 5.0kb downstream 5.0kb downstream 5000 false Chr02N: 44235539-44240538 Panicum virgatum
Pavir.2NG235700 10.0kb upstream 10.0kb upstream 11803 true Chr02N: 44240539-44252341 Panicum virgatum
Pavir.2NG235700 10.0kb upstream 10.0kb upstream 10000 false Chr02N: 44242342-44252341 Panicum virgatum
Pavir.2NG235700 10.0kb downstream 10.0kb downstream 11803 true Chr02N: 44230539-44242341 Panicum virgatum
Pavir.2NG235700 10.0kb downstream 10.0kb downstream 10000 false Chr02N: 44230539-44240538 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122082231 5267 Panicoideae Singleton cluster - no MSA
124380510 5269 Grass Singleton cluster - no MSA
122050018 5273 Angiosperm View MSA
123429243 5275 Viridiplantae View MSA
121311687 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain