Gene : Thecc1EG025471 T. cacao v1.1
Defline:  (1 of 1) PTHR13856//PTHR13856:SF93 - VHS DOMAIN CONTAINING PROTEIN FAMILY // SUBFAMILY NOT NAMED Genomic Order:  2145
Name:  ? Thecc1EG025471 Secondary Identifier:  ? PAC:27423197
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG025471 0.5kb upstream 0.5kb upstream 4953 true scaffold_5: 32948955-32953907 Theobroma cacao
Thecc1EG025471 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 32953408-32953907 Theobroma cacao
Thecc1EG025471 0.5kb downstream 0.5kb downstream 4953 true scaffold_5: 32948455-32953407 Theobroma cacao
Thecc1EG025471 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 32948455-32948954 Theobroma cacao
Thecc1EG025471 1.0kb upstream 1.0kb upstream 5453 true scaffold_5: 32948955-32954407 Theobroma cacao
Thecc1EG025471 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 32953408-32954407 Theobroma cacao
Thecc1EG025471 1.0kb downstream 1.0kb downstream 5453 true scaffold_5: 32947955-32953407 Theobroma cacao
Thecc1EG025471 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 32947955-32948954 Theobroma cacao
Thecc1EG025471 2.0kb upstream 2.0kb upstream 6453 true scaffold_5: 32948955-32955407 Theobroma cacao
Thecc1EG025471 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 32953408-32955407 Theobroma cacao
Thecc1EG025471 2.0kb downstream 2.0kb downstream 6453 true scaffold_5: 32946955-32953407 Theobroma cacao
Thecc1EG025471 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 32946955-32948954 Theobroma cacao
Thecc1EG025471 5.0kb upstream 5.0kb upstream 9453 true scaffold_5: 32948955-32958407 Theobroma cacao
Thecc1EG025471 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 32953408-32958407 Theobroma cacao
Thecc1EG025471 5.0kb downstream 5.0kb downstream 9453 true scaffold_5: 32943955-32953407 Theobroma cacao
Thecc1EG025471 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 32943955-32948954 Theobroma cacao
Thecc1EG025471 10.0kb upstream 10.0kb upstream 14453 true scaffold_5: 32948955-32963407 Theobroma cacao
Thecc1EG025471 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 32953408-32963407 Theobroma cacao
Thecc1EG025471 10.0kb downstream 10.0kb downstream 14453 true scaffold_5: 32938955-32953407 Theobroma cacao
Thecc1EG025471 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 32938955-32948954 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123833666 5264 Brassicales-Malvales View MSA
124340636 5266 SBM View MSA
124239478 5268 Malvidae View MSA
124062688 5270 Rosid View MSA
123746960 5271 Pentapetalae View MSA
122785601 5272 Eudicot View MSA
122046025 5273 Angiosperm View MSA
121345678 5274 Embryophyte View MSA
123380253 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain