Gene : Thecc1EG025674 T. cacao v1.1
Defline:  (1 of 8) PTHR11945//PTHR11945:SF183 - MADS BOX PROTEIN // AGAMOUS-LIKE MADS-BOX PROTEIN AGL80-RELATED Genomic Order:  2302
Name:  ? Thecc1EG025674 Secondary Identifier:  ? PAC:27425383
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG025674 0.5kb upstream 0.5kb upstream 1867 true scaffold_5: 34051531-34053397 Theobroma cacao
Thecc1EG025674 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 34052898-34053397 Theobroma cacao
Thecc1EG025674 0.5kb downstream 0.5kb downstream 1867 true scaffold_5: 34051031-34052897 Theobroma cacao
Thecc1EG025674 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 34051031-34051530 Theobroma cacao
Thecc1EG025674 1.0kb upstream 1.0kb upstream 2367 true scaffold_5: 34051531-34053897 Theobroma cacao
Thecc1EG025674 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 34052898-34053897 Theobroma cacao
Thecc1EG025674 1.0kb downstream 1.0kb downstream 2367 true scaffold_5: 34050531-34052897 Theobroma cacao
Thecc1EG025674 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 34050531-34051530 Theobroma cacao
Thecc1EG025674 2.0kb upstream 2.0kb upstream 3367 true scaffold_5: 34051531-34054897 Theobroma cacao
Thecc1EG025674 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 34052898-34054897 Theobroma cacao
Thecc1EG025674 2.0kb downstream 2.0kb downstream 3367 true scaffold_5: 34049531-34052897 Theobroma cacao
Thecc1EG025674 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 34049531-34051530 Theobroma cacao
Thecc1EG025674 5.0kb upstream 5.0kb upstream 6367 true scaffold_5: 34051531-34057897 Theobroma cacao
Thecc1EG025674 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 34052898-34057897 Theobroma cacao
Thecc1EG025674 5.0kb downstream 5.0kb downstream 6367 true scaffold_5: 34046531-34052897 Theobroma cacao
Thecc1EG025674 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 34046531-34051530 Theobroma cacao
Thecc1EG025674 10.0kb upstream 10.0kb upstream 11367 true scaffold_5: 34051531-34062897 Theobroma cacao
Thecc1EG025674 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 34052898-34062897 Theobroma cacao
Thecc1EG025674 10.0kb downstream 10.0kb downstream 11367 true scaffold_5: 34041531-34052897 Theobroma cacao
Thecc1EG025674 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 34041531-34051530 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123842975 5264 Brassicales-Malvales View MSA
124323905 5266 SBM View MSA
124254245 5268 Malvidae View MSA
124074630 5270 Rosid View MSA
123753664 5271 Pentapetalae View MSA
122797561 5272 Eudicot View MSA
122050867 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain