Gene : Thecc1EG025683 T. cacao v1.1
Defline:  (1 of 1) PF05042//PF14227 - Caleosin related protein (Caleosin) // gag-polypeptide of LTR copia-type (UBN2_2) Genomic Order:  2310
Name:  ? Thecc1EG025683 Secondary Identifier:  ? PAC:27423830
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-321 Theobroma cacao pathologic  
Tcacao PWY-6917 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG025683 0.5kb upstream 0.5kb upstream 2168 true scaffold_5: 34086714-34088881 Theobroma cacao
Thecc1EG025683 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 34086714-34087213 Theobroma cacao
Thecc1EG025683 0.5kb downstream 0.5kb downstream 2168 true scaffold_5: 34087214-34089381 Theobroma cacao
Thecc1EG025683 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 34088882-34089381 Theobroma cacao
Thecc1EG025683 1.0kb upstream 1.0kb upstream 2668 true scaffold_5: 34086214-34088881 Theobroma cacao
Thecc1EG025683 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 34086214-34087213 Theobroma cacao
Thecc1EG025683 1.0kb downstream 1.0kb downstream 2668 true scaffold_5: 34087214-34089881 Theobroma cacao
Thecc1EG025683 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 34088882-34089881 Theobroma cacao
Thecc1EG025683 2.0kb upstream 2.0kb upstream 3668 true scaffold_5: 34085214-34088881 Theobroma cacao
Thecc1EG025683 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 34085214-34087213 Theobroma cacao
Thecc1EG025683 2.0kb downstream 2.0kb downstream 3668 true scaffold_5: 34087214-34090881 Theobroma cacao
Thecc1EG025683 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 34088882-34090881 Theobroma cacao
Thecc1EG025683 5.0kb upstream 5.0kb upstream 6668 true scaffold_5: 34082214-34088881 Theobroma cacao
Thecc1EG025683 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 34082214-34087213 Theobroma cacao
Thecc1EG025683 5.0kb downstream 5.0kb downstream 6668 true scaffold_5: 34087214-34093881 Theobroma cacao
Thecc1EG025683 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 34088882-34093881 Theobroma cacao
Thecc1EG025683 10.0kb upstream 10.0kb upstream 11668 true scaffold_5: 34077214-34088881 Theobroma cacao
Thecc1EG025683 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 34077214-34087213 Theobroma cacao
Thecc1EG025683 10.0kb downstream 10.0kb downstream 11668 true scaffold_5: 34087214-34098881 Theobroma cacao
Thecc1EG025683 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 34088882-34098881 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123841161 5264 Brassicales-Malvales View MSA
124351377 5266 SBM View MSA
124253923 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain