Gene : Thecc1EG025937 T. cacao v1.1
Defline:  (1 of 1) PTHR21089//PTHR21089:SF10 - SHIKIMATE DEHYDROGENASE // SUBFAMILY NOT NAMED Genomic Order:  2509
Name:  ? Thecc1EG025937 Secondary Identifier:  ? PAC:27421682
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao ARO-PWY Theobroma cacao pathologic  
Tcacao PWY-6163 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG025937 0.5kb upstream 0.5kb upstream 5862 true scaffold_5: 35599793-35605654 Theobroma cacao
Thecc1EG025937 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 35605155-35605654 Theobroma cacao
Thecc1EG025937 0.5kb downstream 0.5kb downstream 5862 true scaffold_5: 35599293-35605154 Theobroma cacao
Thecc1EG025937 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 35599293-35599792 Theobroma cacao
Thecc1EG025937 1.0kb upstream 1.0kb upstream 6362 true scaffold_5: 35599793-35606154 Theobroma cacao
Thecc1EG025937 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 35605155-35606154 Theobroma cacao
Thecc1EG025937 1.0kb downstream 1.0kb downstream 6362 true scaffold_5: 35598793-35605154 Theobroma cacao
Thecc1EG025937 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 35598793-35599792 Theobroma cacao
Thecc1EG025937 2.0kb upstream 2.0kb upstream 7362 true scaffold_5: 35599793-35607154 Theobroma cacao
Thecc1EG025937 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 35605155-35607154 Theobroma cacao
Thecc1EG025937 2.0kb downstream 2.0kb downstream 7362 true scaffold_5: 35597793-35605154 Theobroma cacao
Thecc1EG025937 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 35597793-35599792 Theobroma cacao
Thecc1EG025937 5.0kb upstream 5.0kb upstream 10362 true scaffold_5: 35599793-35610154 Theobroma cacao
Thecc1EG025937 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 35605155-35610154 Theobroma cacao
Thecc1EG025937 5.0kb downstream 5.0kb downstream 10362 true scaffold_5: 35594793-35605154 Theobroma cacao
Thecc1EG025937 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 35594793-35599792 Theobroma cacao
Thecc1EG025937 10.0kb upstream 10.0kb upstream 15362 true scaffold_5: 35599793-35615154 Theobroma cacao
Thecc1EG025937 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 35605155-35615154 Theobroma cacao
Thecc1EG025937 10.0kb downstream 10.0kb downstream 15362 true scaffold_5: 35589793-35605154 Theobroma cacao
Thecc1EG025937 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 35589793-35599792 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791917 5273 Angiosperm View MSA
123826524 5264 Brassicales-Malvales View MSA
124348825 5266 SBM View MSA
124246373 5268 Malvidae View MSA
124070168 5270 Rosid View MSA
123749206 5271 Pentapetalae View MSA
122795293 5272 Eudicot View MSA
121063186 5274 Embryophyte View MSA
123102956 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain