Gene : Pavir.J553400 P. virgatum v4.1
Defline:  (1 of 6) K08912 - light-harvesting complex II chlorophyll a/b binding protein 1 (LHCB1) Genomic Order:  1
Name:  ? Pavir.J553400 Secondary Identifier:  ? PAC:37628732
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.J553400 0.5kb upstream 0.5kb upstream 1676 true scaffold_4823: 1698-3373 Panicum virgatum
Pavir.J553400 0.5kb upstream 0.5kb upstream 500 false scaffold_4823: 1698-2197 Panicum virgatum
Pavir.J553400 0.5kb downstream 0.5kb downstream 1676 true scaffold_4823: 2198-3873 Panicum virgatum
Pavir.J553400 0.5kb downstream 0.5kb downstream 500 false scaffold_4823: 3374-3873 Panicum virgatum
Pavir.J553400 1.0kb upstream 1.0kb upstream 2176 true scaffold_4823: 1198-3373 Panicum virgatum
Pavir.J553400 1.0kb upstream 1.0kb upstream 1000 false scaffold_4823: 1198-2197 Panicum virgatum
Pavir.J553400 1.0kb downstream 1.0kb downstream 2176 true scaffold_4823: 2198-4373 Panicum virgatum
Pavir.J553400 1.0kb downstream 1.0kb downstream 1000 false scaffold_4823: 3374-4373 Panicum virgatum
Pavir.J553400 2.0kb upstream 2.0kb upstream 3176 true scaffold_4823: 198-3373 Panicum virgatum
Pavir.J553400 2.0kb upstream 2.0kb upstream 2000 false scaffold_4823: 198-2197 Panicum virgatum
Pavir.J553400 2.0kb downstream 2.0kb downstream 3176 true scaffold_4823: 2198-5373 Panicum virgatum
Pavir.J553400 2.0kb downstream 2.0kb downstream 2000 false scaffold_4823: 3374-5373 Panicum virgatum
Pavir.J553400 5.0kb upstream 5.0kb upstream 3373 true scaffold_4823: 1-3373 Panicum virgatum
Pavir.J553400 5.0kb upstream 5.0kb upstream 2197 false scaffold_4823: 1-2197 Panicum virgatum
Pavir.J553400 5.0kb downstream 5.0kb downstream 6176 true scaffold_4823: 2198-8373 Panicum virgatum
Pavir.J553400 5.0kb downstream 5.0kb downstream 5000 false scaffold_4823: 3374-8373 Panicum virgatum
Pavir.J553400 10.0kb upstream 10.0kb upstream 3373 true scaffold_4823: 1-3373 Panicum virgatum
Pavir.J553400 10.0kb upstream 10.0kb upstream 2197 false scaffold_4823: 1-2197 Panicum virgatum
Pavir.J553400 10.0kb downstream 10.0kb downstream 9162 true scaffold_4823: 2198-11359 Panicum virgatum
Pavir.J553400 10.0kb downstream 10.0kb downstream 7986 false scaffold_4823: 3374-11359 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122093669 5267 Panicoideae Singleton cluster - no MSA
124587736 5269 Grass View MSA
122050341 5273 Angiosperm View MSA
121349648 5274 Embryophyte View MSA
123426313 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain